{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,13]],"date-time":"2026-01-13T23:44:04Z","timestamp":1768347844749,"version":"3.49.0"},"reference-count":33,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2013,4,26]],"date-time":"2013-04-26T00:00:00Z","timestamp":1366934400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/doi.wiley.com\/10.1002\/tdm_license_1.1"},{"start":{"date-parts":[[2013,4,26]],"date-time":"2013-04-26T00:00:00Z","timestamp":1366934400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"funder":[{"DOI":"10.13039\/501100001665","name":"French National Research Agency","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100006488","name":"INRA","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100006488","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J Appl Microbiol"],"published-print":{"date-parts":[[2013,7]]},"DOI":"10.1111\/jam.12205","type":"journal-article","created":{"date-parts":[[2013,4,13]],"date-time":"2013-04-13T16:42:37Z","timestamp":1365871357000},"page":"163-170","source":"Crossref","is-referenced-by-count":19,"title":["An improved method compatible with metagenomic analyses to extract genomic DNA from soils in <i>Tuber melanosporum<\/i>\n orchards"],"prefix":"10.1093","volume":"115","author":[{"given":"S.","family":"Antony-Babu","sequence":"first","affiliation":[{"name":"INRA, UMR 1136 INRA, Universit\u00e9 de Lorraine \u201cInteractions Arbres Micro-organismes\u201d; Centre INRA de Nancy; Champenoux France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"C.","family":"Murat","sequence":"additional","affiliation":[{"name":"INRA, UMR 1136 INRA, Universit\u00e9 de Lorraine \u201cInteractions Arbres Micro-organismes\u201d; Centre INRA de Nancy; Champenoux France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"A.","family":"Deveau","sequence":"additional","affiliation":[{"name":"INRA, UMR 1136 INRA, Universit\u00e9 de Lorraine \u201cInteractions Arbres Micro-organismes\u201d; Centre INRA de Nancy; Champenoux France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"F.","family":"Le Tacon","sequence":"additional","affiliation":[{"name":"INRA, UMR 1136 INRA, Universit\u00e9 de Lorraine \u201cInteractions Arbres Micro-organismes\u201d; Centre INRA de Nancy; Champenoux France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"P.","family":"Frey-Klett","sequence":"additional","affiliation":[{"name":"INRA, UMR 1136 INRA, Universit\u00e9 de Lorraine \u201cInteractions Arbres Micro-organismes\u201d; Centre INRA de Nancy; Champenoux France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"S.","family":"Uroz","sequence":"additional","affiliation":[{"name":"INRA, UMR 1136 INRA, Universit\u00e9 de Lorraine \u201cInteractions Arbres Micro-organismes\u201d; Centre INRA de Nancy; Champenoux France"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2013,4,26]]},"reference":[{"key":"10.1111\/jam.12205-BIB0001|jam12205-cit-0001","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1016\/j.mimet.2005.10.005","article-title":"DNA extraction from low-biomass carbonate rock: an improved method with reduced contamination and the low-biomass contaminant database","volume":"66","author":"Barton","year":"2006","journal-title":"J Microbiol Methods"},{"key":"10.1111\/jam.12205-BIB0003|jam12205-cit-0003","doi-asserted-by":"crossref","first-page":"449","DOI":"10.1111\/j.1469-8137.2009.03003.x","article-title":"454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity","volume":"184","author":"Bu\u00e9e","year":"2009","journal-title":"New Phytol"},{"key":"10.1111\/jam.12205-BIB0004|jam12205-cit-0004","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1016\/S0167-7012(01)00213-5","article-title":"A strategy for optimizing quality and quantity of DNA extracted from soil","volume":"45","author":"B\u00fcrgmann","year":"2001","journal-title":"J Microbiol Methods"},{"key":"10.1111\/jam.12205-BIB0005|jam12205-cit-0005","doi-asserted-by":"crossref","first-page":"679","DOI":"10.1016\/j.soilbio.2009.12.006","article-title":"The role of ectomycorrhizal communities in forest ecosystem processes: new perspectives and emerging concepts","volume":"42","author":"Courty","year":"2010","journal-title":"Soil Biol Biochem"},{"key":"10.1111\/jam.12205-BIB0006|jam12205-cit-0006","doi-asserted-by":"crossref","first-page":"5428","DOI":"10.1128\/AEM.00120-09","article-title":"Assessment of bias associated with incomplete extraction of microbial DNA from soil","volume":"75","author":"Feinstein","year":"2009","journal-title":"Appl Environ Microbiol"},{"key":"10.1111\/jam.12205-BIB0007|jam12205-cit-0007","doi-asserted-by":"crossref","first-page":"731","DOI":"10.1071\/SR06046","article-title":"Soil factors that influence the fruiting of Tuber melanosporum (black truffle)","volume":"44","author":"Garc\u00eda-Montero","year":"2006","journal-title":"Aust J Soil Res"},{"key":"10.1111\/jam.12205-BIB0008|jam12205-cit-0008","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1016\/S0308-8146(96)00215-4","article-title":"Purification, characterisation and analysis of melanin extracted from Tuber melanosporum Vitt","volume":"58","author":"Harki","year":"1997","journal-title":"Food Chem"},{"key":"10.1111\/jam.12205-BIB0009|jam12205-cit-0009","doi-asserted-by":"crossref","first-page":"2337","DOI":"10.1016\/j.soilbio.2005.04.016","article-title":"Pre-lysis washing improves DNA extraction from a forest soil","volume":"37","author":"He","year":"2005","journal-title":"Soil Biol Biochem"},{"key":"10.1111\/jam.12205-BIB0010|jam12205-cit-0010","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1038\/ismej.2007.2","article-title":"GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes","volume":"1","author":"He","year":"2007","journal-title":"ISME J"},{"key":"10.1111\/jam.12205-BIB0011|jam12205-cit-0011","doi-asserted-by":"crossref","first-page":"401","DOI":"10.1002\/jobm.200900373","article-title":"A developed DNA extraction method for different soil samples","volume":"50","author":"Hu","year":"2010","journal-title":"J Basic Microbiol"},{"key":"10.1111\/jam.12205-BIB0012|jam12205-cit-0012","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1186\/1471-2180-12-93","article-title":"Development and validation of a real-time PCR assay for detection and quantification of Tuber magnatum in soil","volume":"12","author":"Iotti","year":"2012","journal-title":"BMC Microbiol"},{"key":"10.1111\/jam.12205-BIB0013|jam12205-cit-0013","unstructured":"Kashork , C.D. Shaffer , L.G. Sundin , K.S. 2012 Genomic Microarray Quality Assurance http:\/\/cdn.intechweb.org\/pdfs\/22133.pdf"},{"key":"10.1111\/jam.12205-BIB0014|jam12205-cit-0014","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/S0167-7012(99)00093-7","article-title":"Comparison of different methods for the isolation and purification of total community DNA from soil","volume":"39","author":"Krsek","year":"1999","journal-title":"J Microbiol Methods"},{"key":"10.1111\/jam.12205-BIB0015|jam12205-cit-0015","doi-asserted-by":"crossref","first-page":"1025","DOI":"10.1016\/j.soilbio.2004.02.017","article-title":"Diversity of laccase genes from basidiomycetes in a forest soil","volume":"36","author":"Luis","year":"2004","journal-title":"Soil Biol Biochem"},{"key":"10.1111\/jam.12205-BIB0016|jam12205-cit-0016","doi-asserted-by":"crossref","first-page":"1033","DOI":"10.1038\/nature08867","article-title":"P\u00e9rigord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis","volume":"464","author":"Martin","year":"2010","journal-title":"Nature"},{"key":"10.1111\/jam.12205-BIB0017|jam12205-cit-0017","doi-asserted-by":"crossref","first-page":"303","DOI":"10.1186\/gb-2011-12-3-303","article-title":"Next-generation\u201d sequencing becomes \u201cnow-generation","volume":"12","author":"Neafsey","year":"2011","journal-title":"Genome Biol"},{"key":"10.1111\/jam.12205-BIB0018|jam12205-cit-0018","doi-asserted-by":"crossref","first-page":"983","DOI":"10.1007\/s00253-009-1912-0","article-title":"Different influences of DNA purity indices and quantity on PCR-based DGGE and functional gene microarray in soil microbial community study","volume":"82","author":"Ning","year":"2009","journal-title":"Appl Microbiol Biotechnol"},{"key":"10.1111\/jam.12205-BIB0019|jam12205-cit-0019","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1007\/BF02205590","article-title":"Soil organic matter and structural stability: mechanisms and implications for management","volume":"76","author":"Oades","year":"1984","journal-title":"Plant Soil"},{"key":"10.1111\/jam.12205-BIB0020|jam12205-cit-0020","doi-asserted-by":"crossref","first-page":"195","DOI":"10.1016\/0016-7061(95)94048-9","article-title":"Characterization of two humic acid fractions from a calcareous vermiculitic soil: implications for the humification proc\u00e8s","volume":"65","author":"Olk","year":"1995","journal-title":"Geoderma"},{"key":"10.1111\/jam.12205-BIB0021|jam12205-cit-0021","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1097\/00008390-199902000-00002","article-title":"The presence of melanin in genomic DNA isolated from pigmented cell lines interferes with successful polymerase chain reaction: a solution","volume":"9","author":"Price","year":"1999","journal-title":"Melanoma Res"},{"key":"10.1111\/jam.12205-BIB0022|jam12205-cit-0022","doi-asserted-by":"crossref","first-page":"183","DOI":"10.1016\/S1164-5563(03)00033-5","article-title":"Extraction of DNA from soil","volume":"39","author":"Robe","year":"2003","journal-title":"Eur J Soil Biol"},{"key":"10.1111\/jam.12205-BIB0023|jam12205-cit-0023","volume-title":"Molecular Cloning: A Laboratory Manual","author":"Sambrook","year":"1989","edition":"2"},{"key":"10.1111\/jam.12205-BIB0024|jam12205-cit-0024","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1111\/j.1574-6941.2011.01283.x","article-title":"Truffle Br\u00fbl\u00e9: an efficient fungal life strategy","volume":"80","author":"Streiblov\u00e1","year":"2012","journal-title":"FEMS Microbiol Ecol"},{"key":"10.1111\/jam.12205-BIB0025|jam12205-cit-0025","doi-asserted-by":"crossref","first-page":"492","DOI":"10.1016\/j.mib.2004.08.002","article-title":"Metagenomics - the key to the uncultured microbes","volume":"7","author":"Streit","year":"2004","journal-title":"Curr Opin Microbiol"},{"key":"10.1111\/jam.12205-BIB0026|jam12205-cit-0026","doi-asserted-by":"crossref","first-page":"251","DOI":"10.1111\/j.1574-6968.2005.00029.x","article-title":"Detection of Tuber melanosporum DNA in soil","volume":"254","author":"Suz","year":"2006","journal-title":"FEMS Microbiol Lett"},{"key":"10.1111\/jam.12205-BIB0027|jam12205-cit-0027","doi-asserted-by":"crossref","first-page":"2657","DOI":"10.1128\/AEM.59.8.2657-2665.1993","article-title":"Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast","volume":"59","author":"Tebbe","year":"1993","journal-title":"Appl Environ Microbiol"},{"key":"10.1111\/jam.12205-BIB0028|jam12205-cit-0028","doi-asserted-by":"crossref","first-page":"605","DOI":"10.1016\/j.mib.2012.07.001","article-title":"Metagenomics: microbial diversity through a scratched lens","volume":"15","author":"Temperton","year":"2012","journal-title":"Curr Opin Microbiol"},{"key":"10.1111\/jam.12205-BIB0029|jam12205-cit-0029","doi-asserted-by":"crossref","first-page":"1390","DOI":"10.1016\/j.soilbio.2007.12.027","article-title":"Importance of DNA quality in comparative soil microbial community structure analyses","volume":"40","author":"Thakuria","year":"2008","journal-title":"Soil Biol Biochem"},{"key":"10.1111\/jam.12205-BIB0030|jam12205-cit-0030","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1023\/A:1018513530268","article-title":"ADE-4: a multivariate analysis and graphical display software","volume":"7","author":"Thioulouse","year":"1997","journal-title":"Stat Comput"},{"key":"10.1111\/jam.12205-BIB0031|jam12205-cit-0031","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1251\/bpo6","article-title":"Methods for microbial DNA extraction from soil for PCR amplification","volume":"1","author":"Yeates","year":"1998","journal-title":"Biol Proced Online"},{"key":"10.1111\/jam.12205-BIB0032|jam12205-cit-0032","doi-asserted-by":"crossref","first-page":"4800","DOI":"10.1128\/AEM.70.8.4800-4806.2004","article-title":"Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis","volume":"70","author":"Yu","year":"2004","journal-title":"Appl Environ Microbiol"},{"key":"10.1111\/jam.12205-BIB0033|jam12205-cit-0033","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1016\/j.apsoil.2012.02.013","article-title":"The detection of mating type genes of Tuber melanosporum in productive and non productive soils","volume":"57","author":"Zampieri","year":"2012","journal-title":"Appl Soil Ecol"},{"key":"10.1111\/jam.12205-BIB0034|jam12205-cit-0034","doi-asserted-by":"crossref","first-page":"316","DOI":"10.1128\/AEM.62.2.316-322.1996","article-title":"DNA recovery from soils of diverse composition","volume":"62","author":"Zhou","year":"1996","journal-title":"Appl Environ Microbiol"}],"container-title":["Journal of Applied Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.wiley.com\/onlinelibrary\/tdm\/v1\/articles\/10.1111%2Fjam.12205","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.wiley.com\/onlinelibrary\/tdm\/v1\/articles\/10.1111%2Fjam.12205","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/onlinelibrary.wiley.com\/wol1\/doi\/10.1111\/jam.12205\/fullpdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,14]],"date-time":"2023-02-14T14:16:13Z","timestamp":1676384173000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/jambio\/article\/115\/1\/163\/6716345"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,4,26]]},"references-count":33,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2013,7]]}},"URL":"https:\/\/doi.org\/10.1111\/jam.12205","archive":["Portico"],"relation":{},"ISSN":["1364-5072"],"issn-type":[{"value":"1364-5072","type":"print"}],"subject":[],"published":{"date-parts":[[2013,4,26]]}}}