{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,27]],"date-time":"2026-02-27T02:25:27Z","timestamp":1772159127169,"version":"3.50.1"},"reference-count":90,"publisher":"Oxford University Press (OUP)","issue":"3","license":[{"start":{"date-parts":[[2022,9,1]],"date-time":"2022-09-01T00:00:00Z","timestamp":1661990400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"DOI":"10.13039\/501100003130","name":"Fonds Wetenschappelijk Onderzoek","doi-asserted-by":"publisher","award":["1224620N"],"award-info":[{"award-number":["1224620N"]}],"id":[{"id":"10.13039\/501100003130","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003130","name":"Fonds Wetenschappelijk Onderzoek","doi-asserted-by":"publisher","award":["G062519N"],"award-info":[{"award-number":["G062519N"]}],"id":[{"id":"10.13039\/501100003130","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004040","name":"KU Leuven","doi-asserted-by":"publisher","award":["C24\/18\/046"],"award-info":[{"award-number":["C24\/18\/046"]}],"id":[{"id":"10.13039\/501100004040","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,9,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Aims<\/jats:title>\n                  <jats:p>This research aimed to develop and validate a cultivation and monitoring protocol that is suitable for a surrogate microbial community that accounts for the gut microbiota of the ileum of the small intestine.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Methods and Results<\/jats:title>\n                  <jats:p>Five bacterial species have been selected as representatives of the ileal gut microbiota and a general anaerobic medium (MS-BHI, as minimally supplemented brain heart infusion) has been constructed and validated against BCCM\/LGM recommended and commercial media. Moreover, appropriate selective\/differential media have been investigated for monitoring each ileal gut microbiota surrogate. Results showed that MS-BHI was highly efficient in displaying individual and collective behaviour of the ileal gut microbiota species, when compared with other types of media. Likewise, the selective\/differential media managed to identify and describe the behaviour of their targeted species.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Conclusions<\/jats:title>\n                  <jats:p>MS-BHI renders a highly efficient, inexpensive and easy-to-prepare cultivation and enumeration alternative for the surrogate ileal microbiota species. Additionally, the selective\/differential media can identify and quantify the bacteria of the surrogate ileal microbial community.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Significance and Impact of Study<\/jats:title>\n                  <jats:p>The selected gut microbiota species can represent an in vitro ileal community, forming the basis for future studies on small intestinal microbiota. MS-BHI and the proposed monitoring protocol can be used as a standard for gut microbiota studies that utilize conventional microbiological techniques.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1111\/jam.15684","type":"journal-article","created":{"date-parts":[[2022,6,25]],"date-time":"2022-06-25T12:25:07Z","timestamp":1656159907000},"page":"1919-1939","source":"Crossref","is-referenced-by-count":8,"title":["A protocol for the cultivation and monitoring of ileal gut microbiota surrogates"],"prefix":"10.1093","volume":"133","author":[{"given":"Theodora","family":"Akritidou","sequence":"first","affiliation":[{"name":"BioTeC+, Chemical and Biochemical Process Technology and Control Department of Chemical Engineering KU Leuven Ghent Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cindy","family":"Smet","sequence":"additional","affiliation":[{"name":"BioTeC+, Chemical and Biochemical Process Technology and Control Department of Chemical Engineering KU Leuven Ghent Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Simen","family":"Akkermans","sequence":"additional","affiliation":[{"name":"BioTeC+, Chemical and Biochemical Process Technology and Control Department of Chemical Engineering KU Leuven Ghent Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Maria","family":"Tonti","sequence":"additional","affiliation":[{"name":"BioTeC+, Chemical and Biochemical Process Technology and Control Department of Chemical Engineering KU Leuven Ghent Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jennifer","family":"Williams","sequence":"additional","affiliation":[{"name":"School of Biological Sciences, Faculty of Science Dublin Institute of Technology Dublin Ireland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tom","family":"Van de Wiele","sequence":"additional","affiliation":[{"name":"Laboratory of Microbial Ecology and Technology, Faculty of Bioscience Engineering Ghent University Ghent Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5904-1638","authenticated-orcid":false,"given":"Jan F. M.","family":"Van Impe","sequence":"additional","affiliation":[{"name":"BioTeC+, Chemical and Biochemical Process Technology and Control Department of Chemical Engineering KU Leuven Ghent Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2022,9,1]]},"reference":[{"key":"2023011711363094000_jam15684-bib-0001","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1002\/9780471729259.mc13c01s9","article-title":"Laboratory maintenance and cultivation of Bacteroides species","volume":"9","author":"Bacic","year":"2008","journal-title":"Current Protocols in Microbiology"},{"key":"2023011711363094000_jam15684-bib-0002","doi-asserted-by":"crossref","first-page":"15718","DOI":"10.1073\/pnas.0407076101","article-title":"The gut microbiota as an environmental factor that regulates fat storage","volume":"101","author":"B\u00e4ckhed","year":"2004","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"key":"2023011711363094000_jam15684-bib-0003","doi-asserted-by":"crossref","first-page":"1135","DOI":"10.1023\/A:1024761324710","article-title":"Oxidation of thiol compounds by molecular oxygen in aqueous solutions","volume":"52","author":"Bagiyan","year":"2003","journal-title":"Russian Chemical Bulletin"},{"key":"2023011711363094000_jam15684-bib-0004","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1016\/0168-1605(94)90157-0","article-title":"A dynamic approach to predicting bacterial growth in food","volume":"23","author":"Baranyi","year":"1994","journal-title":"International Journal of Food Microbiology"},{"key":"2023011711363094000_jam15684-bib-0005","doi-asserted-by":"crossref","first-page":"390","DOI":"10.1016\/j.chom.2011.04.009","article-title":"Commensal Bacteroides species induce colitis in host-genotype-specific fashion in a mouse model of inflammatory bowel disease","volume":"9","author":"Bloom","year":"2011","journal-title":"Cell Host & Microbe"},{"key":"2023011711363094000_jam15684-bib-0006","doi-asserted-by":"crossref","first-page":"285","DOI":"10.2217\/17460913.2.3.285","article-title":"Microbial communities in the human small intestine: coupling diversity to metagenomics","volume":"2","author":"Booijink","year":"2007","journal-title":"Future Microbiology"},{"key":"2023011711363094000_jam15684-bib-0007","doi-asserted-by":"crossref","first-page":"3213","DOI":"10.1111\/j.1462-2920.2010.02294.x","article-title":"High temporal and inter-individual variation detected in the human ileal microbiota","volume":"12","author":"Booijink","year":"2010","journal-title":"Environmental Microbiology"},{"issue":"1","key":"2023011711363094000_jam15684-bib-0555","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1475-2859-8-28","article-title":"Heme and menaquinone induced electron transport in lactic acid bacteria","volume":"8","author":"Brooijmans","year":"2009","journal-title":"Microbial Cell Factories"},{"key":"2023011711363094000_jam15684-bib-0008","first-page":"1","volume-title":"Comprehensive chemical kinetics","author":"Brown","year":"1980"},{"key":"2023011711363094000_jam15684-bib-0009","doi-asserted-by":"crossref","first-page":"247","DOI":"10.1099\/00221287-58-2-247","article-title":"Haematin-dependent oxidative phosphorylation in Streptococcus faecalis","volume":"58","author":"Bryan-Jones","year":"1969","journal-title":"Journal of General Microbiology"},{"issue":"6","key":"2023011711363094000_jam15684-bib-0010","doi-asserted-by":"crossref","first-page":"1645","DOI":"10.1128\/jb.90.6.1645-1654.1965","article-title":"Specificity of the heme requirement for growth of Bacteroides ruminicola","volume":"90","author":"Caldwell","year":"1965","journal-title":"Journal of Bacteriology"},{"key":"2023011711363094000_jam15684-bib-0011","doi-asserted-by":"crossref","first-page":"681","DOI":"10.1016\/S1004-9541(10)60275-3","article-title":"Influence of l-cysteine concentration on oxidation-reduction potential and biohydrogen production","volume":"18","author":"Chen","year":"2010","journal-title":"Chinese Journal of Chemical Engineering"},{"key":"2023011711363094000_jam15684-bib-0012","doi-asserted-by":"crossref","first-page":"378","DOI":"10.1006\/taap.1996.8048","article-title":"Metabolism and cytotoxicity of menadione and its metabolite in rat platelets","volume":"142","author":"Chung","year":"1997","journal-title":"Toxicology and Applied Pharmacology"},{"key":"2023011711363094000_jam15684-bib-0013","doi-asserted-by":"crossref","first-page":"178","DOI":"10.1038\/nature11319","article-title":"Gut microbiota composition correlates with diet and health in the elderly","volume":"488","author":"Claesson","year":"2012","journal-title":"Nature"},{"key":"2023011711363094000_jam15684-bib-0014","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1051\/lait:2003019","article-title":"Isolation, characterisation and identification of lactobacilli focusing mainly on cheeses and other dairy products","volume":"83","author":"Coeuret","year":"2003","journal-title":"Le Lait, INRA Editions"},{"key":"2023011711363094000_jam15684-bib-0015","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1016\/j.cca.2015.01.003","article-title":"The role of the gut microbiome in the healthy adult status","volume":"451","author":"D'Argenio","year":"2015","journal-title":"Clinica Chimica Acta"},{"key":"2023011711363094000_jam15684-bib-0016","first-page":"130","article-title":"A medium for cultivation of lactobacilli","volume":"23","author":"De Man","year":"1960","journal-title":"Journal of Applied Microbiology"},{"key":"2023011711363094000_jam15684-bib-0017","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1016\/j.copbio.2010.08.003","article-title":"Systems biology of the gut: the interplay of food, microbiota and host at the mucosal interface","volume":"21","author":"dos Santos","year":"2010","journal-title":"Current Opinion in Biotechnology"},{"key":"2023011711363094000_jam15684-bib-0018","doi-asserted-by":"crossref","first-page":"1635","DOI":"10.1126\/science.1110591","article-title":"Diversity of the human intestinal microbial flora","volume":"308","author":"Eckburg","year":"2005","journal-title":"Science"},{"key":"2023011711363094000_jam15684-bib-0019","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1016\/j.copbio.2014.09.005","article-title":"The small intestine microbiota, nutritional modulation and relevance for health","volume":"32","author":"El Aidy","year":"2015","journal-title":"Current Opinion in Biotechnology"},{"key":"2023011711363094000_jam15684-bib-0020","doi-asserted-by":"crossref","first-page":"590","DOI":"10.1016\/j.anaerobe.2010.10.005","article-title":"Diversity of Lactobacillus and Bifidobacterium in feces of herbivores, omnivores and carnivores","volume":"16","author":"Endo","year":"2010","journal-title":"Anaerobe"},{"key":"2023011711363094000_jam15684-bib-0021","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1590\/1807-2577.02919","article-title":"Probiotics study with Streptococcus salivarius and its ability to produce bacteriocins and adherence to KB cells","volume":"48","author":"Fantinato","year":"2019","journal-title":"Revista de Odontologia da UNESP"},{"issue":"1","key":"2023011711363094000_jam15684-bib-0666","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s40168-017-0380-5","article-title":"Quinones are growth factors for the human gut microbiota","volume":"5","author":"Fenn","year":"2017","journal-title":"Microbiome"},{"key":"2023011711363094000_jam15684-bib-0022","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1080\/089106001750071690","article-title":"Differences in the distribution of bifidobacterial and enterobacterial species in human faecal microflora of three different (children, adults, elderly) age groups","volume":"13","author":"Gavini","year":"2001","journal-title":"Microbial Ecology in Health and Disease"},{"key":"2023011711363094000_jam15684-bib-0023","doi-asserted-by":"crossref","first-page":"164","DOI":"10.1128\/jb.80.2.164-170.1960","article-title":"Haemin and vitamin K compounds as required factors for the cultivation of certain strains of Bacteroides melaninogenicus","volume":"80","author":"Gibbons","year":"1960","journal-title":"Journal of Bacteriology"},{"issue":"5","key":"2023011711363094000_jam15684-bib-0777","doi-asserted-by":"crossref","first-page":"6252","DOI":"10.1073\/pnas.1102938108","article-title":"Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice","volume":"108","author":"Goodman","year":"2011","journal-title":"Proceedings of the National Academy of Sciences"},{"key":"2023011711363094000_jam15684-bib-0024","doi-asserted-by":"crossref","first-page":"111","DOI":"10.12938\/bifidus.29.111","article-title":"Fecal Bifidobacterium levels in elderly nursing home patients\u2014Are levels as expected?","volume":"29","author":"Gueimonde","year":"2010","journal-title":"Bioscience and Microflora"},{"key":"2023011711363094000_jam15684-bib-0025","doi-asserted-by":"crossref","first-page":"907","DOI":"10.1016\/S1286-4579(00)00392-0","article-title":"Mechanisms of bacterial resistance and response to bile","volume":"2","author":"Gunn","year":"2000","journal-title":"Microbes and Infection"},{"key":"2023011711363094000_jam15684-bib-0027","doi-asserted-by":"crossref","first-page":"1093","DOI":"10.1099\/jmm.0.45935-0","article-title":"Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism","volume":"54","author":"Hayashi","year":"2005","journal-title":"Journal of Medical Microbiology"},{"key":"2023011711363094000_jam15684-bib-0028","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1016\/S0167-7012(97)00025-0","article-title":"LAMVAB\u2014A new selective medium for the isolation of lactobacilli from faeces","volume":"29","author":"Hartemink","year":"1997","journal-title":"Journal of Microbiological Methods"},{"key":"2023011711363094000_jam15684-bib-0029","doi-asserted-by":"crossref","DOI":"10.1007\/978-1-4613-1775-3","volume-title":"Anaerobic bacteria","author":"Holland","year":"1987"},{"key":"2023011711363094000_jam15684-bib-0030","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1016\/S0580-9517(08)70503-8","article-title":"Chapter IV: a roll tube method for cultivation of strict anaerobes","volume":"3","author":"Hungate","year":"1969","journal-title":"Methods in Microbiology"},{"key":"2023011711363094000_jam15684-bib-0031","doi-asserted-by":"crossref","first-page":"2070","DOI":"10.1002\/1873-3468.13064","article-title":"Metabolism of hydrogen gases and bile acids in the gut microbiome","volume":"592","author":"Hylemon","year":"2018","journal-title":"FEBS Letters"},{"key":"2023011711363094000_jam15684-bib-0032","doi-asserted-by":"crossref","first-page":"9","DOI":"10.2174\/1874285801307010009","article-title":"Phenotypic and genotypic characterization of Escherichia coli isolated from untreated surface waters","volume":"7","author":"Janezic","year":"2013","journal-title":"The Open Microbiology Journal"},{"key":"2023011711363094000_jam15684-bib-0033","first-page":"321","article-title":"Role of the gut microbiota in immunity and inflammatory disease","volume":"13","author":"Kamada","year":"2013","journal-title":"National Review"},{"key":"2023011711363094000_jam15684-bib-0034","doi-asserted-by":"crossref","first-page":"137","DOI":"10.4103\/jphi.JPHI_8_17","article-title":"Isolation and identification of probiotic Lactobacillus from local dairy and evaluating their antagonistic effect on pathogens","volume":"7","author":"Karami","year":"2017","journal-title":"International Journal of Pharmaceutical Investigation"},{"key":"2023011711363094000_jam15684-bib-0035","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1016\/j.anaerobe.2016.05.004","article-title":"Screening for enterotoxigenic Bacteroides fragilis in stool samples","volume":"40","author":"Keenan","year":"2016","journal-title":"Anaerobe"},{"key":"2023011711363094000_jam15684-bib-0036","doi-asserted-by":"crossref","first-page":"2318","DOI":"10.3389\/fimmu.2018.02318","article-title":"Commensal Escherichia coli strains can promote intestinal inflammation via differential interleukin-6 production","volume":"9","author":"Kittana","year":"2018","journal-title":"Frontiers in Immunology"},{"key":"2023011711363094000_jam15684-bib-0037","doi-asserted-by":"crossref","first-page":"273","DOI":"10.1177\/104063870101300319","article-title":"Use of eosin methylene blue agar to differentiate from other gram-negative mastitis pathogens","volume":"13","author":"Leininger","year":"2001","journal-title":"Journal of Veterinary Diagnostic Investigation"},{"key":"2023011711363094000_jam15684-bib-0038","doi-asserted-by":"crossref","first-page":"2194","DOI":"10.1111\/j.1462-2920.2009.01941.x","article-title":"Better living through microbial action: the benefits of the mammalian gastrointestinal microbiota on the host","volume":"11","author":"Leser","year":"2009","journal-title":"Environmental Microbiology"},{"key":"2023011711363094000_jam15684-bib-0039","doi-asserted-by":"crossref","first-page":"161","DOI":"10.1016\/S0168-1605(02)00365-3","article-title":"A collaborative study of a method for the enumeration of probiotic bifidobacteria in animal feed","volume":"83","author":"Leuschner","year":"2003","journal-title":"International Journal of Food Microbiology"},{"key":"2023011711363094000_jam15684-bib-0040","doi-asserted-by":"crossref","first-page":"1490","DOI":"10.1039\/c9mt00133f","article-title":"Reactive oxygen species production enhanced with the reduction of menadione by active thioredoxin reductase 1","volume":"11","author":"Li","year":"2019","journal-title":"Metallomics"},{"key":"2023011711363094000_jam15684-bib-0041","doi-asserted-by":"crossref","first-page":"1589","DOI":"10.1093\/jac\/dks129","article-title":"Use of hydrogen peroxide as a biocide: new consideration of its mechanisms of biocidal action","volume":"67","author":"Linley","year":"2012","journal-title":"The Journal of Antimicrobial Chemotherapy"},{"key":"2023011711363094000_jam15684-bib-0042","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1111\/j.1574-6968.2011.02212.x","article-title":"Flavin mononucleotide (FMN)-based fluorescent protein (FbFP) as reporter for gene expression in the anaerobe Bacteroides fragilis","volume":"317","author":"Lobo","year":"2011","journal-title":"FEMS Microbiology Letters"},{"key":"2023011711363094000_jam15684-bib-0043","first-page":"292","volume-title":"Media for the isolation-cultivation-identification-maintenance of medical bacteria","author":"MacFaddin","year":"1985"},{"key":"2023011711363094000_jam15684-bib-0044","doi-asserted-by":"crossref","first-page":"2056","DOI":"10.1271\/bbb.60022","article-title":"Effects of lactose on colon microbial community structure and function in a four-stage semi-continuous culture system","volume":"70","author":"M\u00e4kivuokko","year":"2006","journal-title":"Bioscience, Biotechnology, and Biochemistry"},{"key":"2023011711363094000_jam15684-bib-0045","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1128\/AEM.70.1.167-173.2004","article-title":"Quantitative PCR with 16S rRNA-gene-targeted species-specific primers for analysis of human intestinal bifidobacteria","volume":"70","author":"Matsuki","year":"2004","journal-title":"Applied and Environmental Microbiology"},{"key":"2023011711363094000_jam15684-bib-0046","doi-asserted-by":"crossref","first-page":"17582","DOI":"10.1073\/pnas.0407613101","article-title":"Menadione metabolism to thiodione in hepatoblastoma by scanning electrochemical microscopy","volume":"101","author":"Mauzeroll","year":"2004","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"key":"2023011711363094000_jam15684-bib-0047","first-page":"1","volume-title":"PATAI'S Chemistry of Functional Groups","author":"McDonnell","year":"2009"},{"key":"2023011711363094000_jam15684-bib-0048","doi-asserted-by":"crossref","first-page":"732","DOI":"10.1017\/S002217240001158X","article-title":"The estimation of bactericidal power of the blood","volume":"38","author":"Miles","year":"1938","journal-title":"Epidemiology and Infection"},{"key":"2023011711363094000_jam15684-bib-0049","first-page":"197","article-title":"A multicompartmental dynamic computer-controlled model simulating the stomach and small-intestine","volume":"23","author":"Minekus","year":"1995","journal-title":"ATLA: Alternatives to Laboratory Animals"},{"key":"2023011711363094000_jam15684-bib-0050","first-page":"1","article-title":"Isolation and Identification of lactobacilli from raw milk samples obtained from Aarey Milk Colony","volume":"5","author":"Mithun","year":"2015","journal-title":"International Journal of Scientific and Research Publications"},{"key":"2023011711363094000_jam15684-bib-0051","doi-asserted-by":"crossref","first-page":"438","DOI":"10.1111\/j.1753-4887.1992.tb02499.x","article-title":"Intestinal flora and aging","volume":"50","author":"Mitsuoka","year":"1992","journal-title":"Nutrition Reviews"},{"key":"2023011711363094000_jam15684-bib-0052","doi-asserted-by":"crossref","first-page":"99","DOI":"10.12938\/bmfh.33.99","article-title":"Establishment of intestinal bacteriology","volume":"33","author":"Mitsuoka","year":"2014","journal-title":"Bioscience of Microbiota, Food and Health"},{"key":"2023011711363094000_jam15684-bib-0053","doi-asserted-by":"crossref","first-page":"254","DOI":"10.1007\/BF00228615","article-title":"Development of a 5-step multichamber reactor as a simulation of the human intestinal microbial ecosystem","volume":"39","author":"Molly","year":"1993","journal-title":"Applied Microbiology and Biotechnology"},{"key":"2023011711363094000_jam15684-bib-0054","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3164\/jcbn.18-56","article-title":"Redox-related gaseous mediators in the gastrointestinal tract","volume":"63","author":"Naito","year":"2018","journal-title":"Journal of Clinical Biochemistry and Nutrition"},{"key":"2023011711363094000_jam15684-bib-0055","doi-asserted-by":"crossref","first-page":"49","DOI":"10.12938\/bifidus1996.17.49","article-title":"Growth stimulation of Bifidobacteria by a mixed culture with vitamin B12-producing Klebsiella pneumoniae IFO 13541","volume":"17","author":"Noda","year":"1998","journal-title":"Bioscience and Microflora"},{"key":"2023011711363094000_jam15684-bib-0056","doi-asserted-by":"crossref","first-page":"281","DOI":"10.1016\/j.idairyj.2009.11.010","article-title":"Gut microbiota: changes throughout the lifespan from infancy to elderly","volume":"20","author":"O'Tool","year":"2010","journal-title":"International Dairy Journal"},{"key":"2023011711363094000_jam15684-bib-0057","first-page":"21","article-title":"Cultivable microbiota in mitis salivarius agar from dental plaque of dogs","volume":"6","author":"Pieri","year":"2018","journal-title":"Journal of Animal Science"},{"key":"2023011711363094000_jam15684-bib-0058","doi-asserted-by":"crossref","first-page":"573","DOI":"10.1099\/00222615-13-4-573","article-title":"The carbon dioxide requirements of anaerobic bacteria","volume":"13","author":"Reilly","year":"1980","journal-title":"Journal of Medical Microbiology"},{"key":"2023011711363094000_jam15684-bib-0059","doi-asserted-by":"crossref","first-page":"220","DOI":"10.1099\/00221287-85-2-220","article-title":"Cytochromes in Streptococcus faecalis var. zymogenes grown in a haematin-containing medium","volume":"85","author":"Ritchey","year":"1974","journal-title":"Journal of General Microbiology"},{"key":"2023011711363094000_jam15684-bib-0060","article-title":"Bacteroides fragilis requires the ferrous-iron transporter FeoAB and the CobN-like proteins BtuS1 and BtuS2 for assimilation of iron released from heme","volume":"8","author":"Rocha","year":"2019","journal-title":"Microbiology"},{"key":"2023011711363094000_jam15684-bib-0061","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1016\/S0009-2797(85)80126-5","article-title":"Interaction of menadione (2-methyl-1,4-naphthoquinone) with glutathione","volume":"55","author":"Ross","year":"1985","journal-title":"Chemico-Biological Interactions"},{"key":"2023011711363094000_jam15684-bib-0062","doi-asserted-by":"crossref","first-page":"399","DOI":"10.1111\/1758-2229.12405","article-title":"Mining metagenomic whole genome sequences revealed subdominant but constant Lactobacillus population in the human gut microbiota","volume":"8","author":"Rossi","year":"2016","journal-title":"Environmental Microbiology Reports"},{"key":"2023011711363094000_jam15684-bib-0063","doi-asserted-by":"crossref","first-page":"55","DOI":"10.3389\/fcimb.2013.00055","article-title":"Role and regulation of heme iron acquisition in gram-negative pathogens","volume":"3","author":"Runyen-Janecky","year":"2013","journal-title":"Frontiers in Cellular and Infection Microbiology"},{"key":"2023011711363094000_jam15684-bib-0064","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1016\/S0009-2797(98)00024-6","article-title":"The relative importance of oxidative stress versus arylation in the mechanism of quinone cytotoxicity to platelets","volume":"113","author":"Seung","year":"1998","journal-title":"Chemico-Biological Interactions"},{"key":"2023011711363094000_jam15684-bib-0065","doi-asserted-by":"crossref","first-page":"894","DOI":"10.3168\/jds.S0022-0302(00)74953-8","article-title":"Probiotic bacteria: selective enumeration and survival in dairy foods","volume":"83","author":"Shah","year":"2000","journal-title":"Journal of Dairy Science"},{"key":"2023011711363094000_jam15684-bib-0066","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/srep02532","article-title":"Understanding the interactions between bacteria in the human gut through metabolic modeling","volume":"3","author":"Shoaie","year":"2013","journal-title":"Scientific Reports"},{"key":"2023011711363094000_jam15684-bib-0067","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12967-017-1175-y","article-title":"Influence of diet on the gut microbiome and implications for human health","volume":"15","author":"Singh","year":"2017","journal-title":"Journal of Translational Medicine"},{"key":"2023011711363094000_jam15684-bib-0068","doi-asserted-by":"crossref","first-page":"386","DOI":"10.1128\/aem.34.4.386-390.1977","article-title":"Requirement of heme for growth of Bacteroides fragilis","volume":"34","author":"Sperry","year":"1977","journal-title":"Applied and Environmental Microbiology"},{"key":"2023011711363094000_jam15684-bib-0069","doi-asserted-by":"crossref","first-page":"122","DOI":"10.1016\/j.ijantimicag.2012.10.001","article-title":"Molecular analysis of the carbapenem and metronidazole resistance mechanisms of Bacteroides strains reported in a Europe-wide antibiotic resistance survey","volume":"41","author":"S\u00f3ki","year":"2013","journal-title":"International Journal of Antimicrobial Agents"},{"key":"2023011711363094000_jam15684-bib-0070","doi-asserted-by":"crossref","first-page":"160","DOI":"10.1099\/ijs.0.65204-0","article-title":"Streptococcus dentirousetti sp. nov., isolated from the oral cavities of bats","volume":"58","author":"Takada","year":"2008","journal-title":"International Journal of Systematic and Evolutionary Microbiology"},{"key":"2023011711363094000_jam15684-bib-0071","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1038\/nrmicro2298","article-title":"The population genetics of commensal Escherichia coli","volume":"8","author":"Tenaillon","year":"2010","journal-title":"Nature Reviews. Microbiology"},{"key":"2023011711363094000_jam15684-bib-0072","doi-asserted-by":"crossref","first-page":"12419","DOI":"10.1016\/S0021-9258(18)33730-X","article-title":"The metabolism of menadione (2-methyl-1,4-naphthoquinone) by isolated hepatocytes. A study of the implications of oxidative stress in intact cells","volume":"257","author":"Thor","year":"1982","journal-title":"The Journal of Biological Chemistry"},{"key":"2023011711363094000_jam15684-bib-0073","doi-asserted-by":"crossref","first-page":"782","DOI":"10.1111\/j.1469-0691.2006.01494.x","article-title":"A possible role of Bacteroides fragilis enterotoxin in the aetiology of colorectal cancer","volume":"12","author":"Toprak","year":"2006","journal-title":"Clinical Microbiology and Infection"},{"key":"2023011711363094000_jam15684-bib-0074","doi-asserted-by":"crossref","first-page":"242","DOI":"10.1038\/nature11552","article-title":"Functional interactions between the gut microbiota and host metabolism","volume":"489","author":"Tremaroli","year":"2012","journal-title":"Nature"},{"key":"2023011711363094000_jam15684-bib-0075","doi-asserted-by":"crossref","first-page":"1534","DOI":"10.1128\/AEM.02216-08","article-title":"Exploring the diversity of the bifidobacterial population in the human intestinal tract","volume":"75","author":"Turroni","year":"2009","journal-title":"Applied and Environmental Microbiology"},{"key":"2023011711363094000_jam15684-bib-0076","first-page":"1","article-title":"A simple preparation of liquid media for the cultivation of strict anaerobes","volume":"4","author":"Uchino","year":"2011","journal-title":"Journal of Petroleum & Environmental Biotechnology"},{"key":"2023011711363094000_jam15684-bib-0077","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1002\/9781118229187.ch11","volume-title":"Decontamination of fresh and minimally processed produce","author":"Ukuku","year":"2012"},{"key":"2023011711363094000_jam15684-bib-0078","doi-asserted-by":"crossref","first-page":"574","DOI":"10.1038\/nrmicro.2017.112","article-title":"Microbiome: the microbiota maintains oxygen balance in the gut","volume":"15","author":"Vacca","year":"2017","journal-title":"Nature Reviews. Microbiology"},{"key":"2023011711363094000_jam15684-bib-0079","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0083418","article-title":"Comparative genomics analysis of streptococcus isolates from the human small intestine reveals their adaptation to a highly dynamic ecosystem","volume":"8","author":"Van den Bogert","year":"2013","journal-title":"PLoS ONE"},{"key":"2023011711363094000_jam15684-bib-0080","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12866-014-0334-z","article-title":"Bifidobacteria strains isolated from stools of iron deficient infants can efficiently sequester iron","volume":"15","author":"Vazquez-Gutierrez","year":"2015","journal-title":"BMC Microbiology"},{"key":"2023011711363094000_jam15684-bib-0081","doi-asserted-by":"crossref","first-page":"57","DOI":"10.3389\/fmicb.2019.00057","article-title":"Benefits and inputs from lactic acid bacteria and their bacteriocins as alternatives to antibiotic growth promoters during food-animal production","volume":"10","author":"Vieco-Saiz","year":"2019","journal-title":"Frontiers in Microbiology"},{"key":"2023011711363094000_jam15684-bib-0082","doi-asserted-by":"crossref","first-page":"4985","DOI":"10.1128\/AEM.00753-08","article-title":"Ecological role of lactobacilli in the gastrointestinal tract: implications for fundamental and biomedical research","volume":"74","author":"Walter","year":"2008","journal-title":"Applied and Environmental Microbiology"},{"key":"2023011711363094000_jam15684-bib-0083","volume-title":"Bacteriology of humans: an ecological perspective","author":"Wilson","year":"2008"},{"key":"2023011711363094000_jam15684-bib-0084","doi-asserted-by":"crossref","first-page":"43","DOI":"10.12938\/bifidus1982.3.1_43","article-title":"Growth of Bifidobacteria in adults' intestines on oral administration of sugar source, pantethine and riboflavin","volume":"3","author":"Yazaka","year":"1984","journal-title":"Bifidobact and Microflora"},{"key":"2023011711363094000_jam15684-bib-0085","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1007\/978-0-387-09550-9_3","article-title":"Overview of the gastrointestinal microbiota","volume":"635","author":"Young","year":"2008","journal-title":"Advances in Experimental Medicine and Biology"},{"key":"2023011711363094000_jam15684-bib-0086","doi-asserted-by":"crossref","first-page":"2235","DOI":"10.1038\/ismej.2016.13","article-title":"Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes","volume":"10","author":"Zhang","year":"2016","journal-title":"The ISME Journal"},{"issue":"1","key":"2023011711363094000_jam15684-bib-0087","doi-asserted-by":"crossref","first-page":"47","DOI":"10.1590\/S1807-59322007000100008","article-title":"Digestive tract microbiota in healthy volunteers","volume":"62","author":"Zilberstein","year":"2007","journal-title":"Clinics"},{"key":"2023011711363094000_jam15684-bib-0088","doi-asserted-by":"crossref","first-page":"1415","DOI":"10.1038\/ismej.2011.212","article-title":"The human small intestine microbiota is driven by rapid uptake and conversion of simple carbohydrates","volume":"6","author":"Zoetendal","year":"2012","journal-title":"The ISME Journal"}],"container-title":["Journal of Applied Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1111\/jam.15684","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/full-xml\/10.1111\/jam.15684","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/academic.oup.com\/jambio\/article-pdf\/133\/3\/1919\/48737983\/jambio1919.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/jambio\/article-pdf\/133\/3\/1919\/48737983\/jambio1919.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,17]],"date-time":"2023-01-17T16:18:30Z","timestamp":1673972310000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/jambio\/article\/133\/3\/1919\/6989378"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,9,1]]},"references-count":90,"journal-issue":{"issue":"3","published-online":{"date-parts":[[2022,9,1]]},"published-print":{"date-parts":[[2022,9,1]]}},"URL":"https:\/\/doi.org\/10.1111\/jam.15684","relation":{},"ISSN":["1365-2672","1364-5072"],"issn-type":[{"value":"1365-2672","type":"electronic"},{"value":"1364-5072","type":"print"}],"subject":[],"published-other":{"date-parts":[[2022,9,1]]},"published":{"date-parts":[[2022,9,1]]}}}