{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,11]],"date-time":"2026-06-11T10:05:34Z","timestamp":1781172334340,"version":"3.54.1"},"reference-count":95,"publisher":"Wiley","issue":"11","license":[{"start":{"date-parts":[[2017,4,27]],"date-time":"2017-04-27T00:00:00Z","timestamp":1493251200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"funder":[{"DOI":"10.13039\/501100005416","name":"Norges Forskningsr\u00e5d","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100005416","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Journal of Fish Diseases"],"published-print":{"date-parts":[[2017,11]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>The Norwegian aquaculture of Atlantic salmon (<jats:italic>Salmo salar<\/jats:italic> L.) is hampered by ulcerative disorders associated with bacterial infections. Chronic ulceration may provide microenvironments that disturb the normal microbial biodiversity of external surfaces. Studying the composition of microbial communities in skin ulcers will enhance our understanding of ulcer aetiology. To achieve this, we tested marine farmed Atlantic salmon and sampled the base and edge of ulcers at the end of winter (April) and end of summer (September), in addition to skin mucus of healthy individuals. In order to assess microbiota associated with the host and obtain insight into the environmental ecology, we also sampled sea water, the sediment layer underneath the farm facility and the distal intestine of Atlantic salmon. The skin microbiota of Atlantic salmon was different from that of the surrounding water. Residential <jats:italic>Tenacibaculum<\/jats:italic> and <jats:italic>Arcobacter<\/jats:italic> species persistently dominated the cutaneous skin and ulcer mucus surfaces of Atlantic salmon during both winter and summer periods. The intestinal microbiota was dominated by <jats:italic>Mycoplasma<\/jats:italic> with an increase in <jats:italic>Aliivibrio<\/jats:italic> and <jats:italic>Alcaligenes<\/jats:italic> abundance in the intestine of fish with ulcerative disorder at the end of winter. These findings suggest the presence of resilient microbes in the mucus surfaces of Atlantic salmon.<\/jats:p>","DOI":"10.1111\/jfd.12632","type":"journal-article","created":{"date-parts":[[2017,4,27]],"date-time":"2017-04-27T22:07:59Z","timestamp":1493330879000},"page":"1645-1663","source":"Crossref","is-referenced-by-count":76,"title":["The environmental and host\u2010associated bacterial microbiota of Arctic seawater\u2010farmed Atlantic salmon with ulcerative disorders"],"prefix":"10.1111","volume":"40","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-8440-3485","authenticated-orcid":false,"given":"C","family":"Karlsen","sequence":"first","affiliation":[{"name":"Department of Food Safety and Infection Biology Norwegian University of Life Sciences (NMBU) Oslo Norway"},{"name":"Laboratory for Microbial Dynamics (LaMDa) Department of Pharmaceutical Biosciences Center of Integrative Microbial Evolution (CIME) School of Pharmacy University of Oslo Oslo Norway"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"K F","family":"Ottem","sequence":"additional","affiliation":[{"name":"Cermaq Norway Nordfold Norway"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"\u00d8yvind Jakobsen","family":"Brevik","sequence":"additional","affiliation":[{"name":"Cermaq Group AS Oslo Norway"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M","family":"Davey","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences University of Oslo Oslo Norway"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"H","family":"S\u00f8rum","sequence":"additional","affiliation":[{"name":"Department of Food Safety and Infection Biology Norwegian University of Life Sciences (NMBU) Oslo Norway"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"H C","family":"Winther\u2010Larsen","sequence":"additional","affiliation":[{"name":"Laboratory for Microbial Dynamics (LaMDa) Department of Pharmaceutical Biosciences Center of Integrative Microbial Evolution (CIME) School of Pharmacy University of Oslo Oslo Norway"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2017,4,27]]},"reference":[{"key":"e_1_2_8_2_1","doi-asserted-by":"publisher","DOI":"10.1080\/08997659.2013.847872"},{"key":"e_1_2_8_3_1","doi-asserted-by":"publisher","DOI":"10.3354\/dao01954"},{"key":"e_1_2_8_4_1","doi-asserted-by":"publisher","DOI":"10.3147\/jsfp.35.117"},{"key":"e_1_2_8_5_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1462-2920.2007.01381.x"},{"key":"e_1_2_8_6_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2427.2006.01642.x"},{"key":"e_1_2_8_7_1","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2761.1998.00065.x"},{"key":"e_1_2_8_8_1","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-50-2-479"},{"key":"e_1_2_8_9_1","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1128\/jb.62.3.293-300.1951","article-title":"Studies on lysogenesis I.: the mode of phage liberation by lysogenic Escherichia coli","volume":"62","author":"Bertani G.","year":"1951","journal-title":"Journal of Bacteriology"},{"key":"e_1_2_8_10_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6941.2005.00012.x"},{"key":"e_1_2_8_11_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.micpath.2011.10.007"},{"key":"e_1_2_8_12_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2761.2011.01246.x"},{"key":"e_1_2_8_13_1","volume-title":"Fiskehelserapporten 2014","author":"Born\u00f8 G.","year":"2015"},{"key":"e_1_2_8_14_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro3326"},{"key":"e_1_2_8_15_1","first-page":"378","article-title":"Arcobacter cryaerophilus infection in cross albino rainbow trout and rainbow trout (Oncorhynchus mykiss Walbaum): bacteriology, gross pathology and clinical pathology","volume":"3","author":"Bulut M.","year":"2004","journal-title":"Journal of Animal and Veterinary Advances"},{"key":"e_1_2_8_16_1","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.f.303"},{"key":"e_1_2_8_17_1","doi-asserted-by":"publisher","DOI":"10.1093\/femsec\/fiv061"},{"key":"e_1_2_8_18_1","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.00034-10"},{"key":"e_1_2_8_19_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.66.4.1692-1697.2000"},{"key":"e_1_2_8_20_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.aquaculture.2016.07.017"},{"key":"e_1_2_8_21_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2014.00646"},{"key":"e_1_2_8_22_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.03006-05"},{"key":"e_1_2_8_23_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq461"},{"key":"e_1_2_8_24_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr381"},{"key":"e_1_2_8_25_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0145-305X(01)00038-6"},{"key":"e_1_2_8_26_1","doi-asserted-by":"crossref","first-page":"2815","DOI":"10.1128\/aem.55.11.2815-2818.1989","article-title":"Presence of the fish pathogen Vibrio salmonicida in fish farm sediments","volume":"55","author":"Enger O.","year":"1989","journal-title":"Applied and Environment Microbiology"},{"key":"e_1_2_8_27_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0083383"},{"key":"e_1_2_8_28_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2015.258"},{"key":"e_1_2_8_29_1","doi-asserted-by":"publisher","DOI":"10.1038\/srep30893"},{"key":"e_1_2_8_30_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2009.142"},{"key":"e_1_2_8_31_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.vetmic.2013.05.009"},{"key":"e_1_2_8_32_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01177-14"},{"key":"e_1_2_8_33_1","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2540.2001.00895.x"},{"key":"e_1_2_8_34_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2012.143"},{"key":"e_1_2_8_35_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00248-014-0462-x"},{"key":"e_1_2_8_36_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2761.1989.tb00570.x"},{"key":"e_1_2_8_37_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00248-002-1011-6"},{"key":"e_1_2_8_38_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.aquaculture.2007.08.045"},{"key":"e_1_2_8_39_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.vetmic.2011.07.024"},{"key":"e_1_2_8_40_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.vetmic.2014.03.011"},{"key":"e_1_2_8_41_1","first-page":"371","article-title":"Beskyttelse mot vinters\u00e5r for\u00e5rsaket av Moritella viscosa etter vaksinering av atlantisk laks med 6\u2010komponentvaksiner","volume":"6","author":"Karlsen C.","year":"2015","journal-title":"Norsk Veterin\u00e6rtidsskrift"},{"key":"e_1_2_8_42_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.aquaculture.2008.10.003"},{"key":"e_1_2_8_43_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2672.2006.03185.x"},{"key":"e_1_2_8_44_1","doi-asserted-by":"publisher","DOI":"10.1264\/jsme2.ME11278"},{"key":"e_1_2_8_45_1","doi-asserted-by":"publisher","DOI":"10.1007\/BF02289565"},{"key":"e_1_2_8_46_1","doi-asserted-by":"publisher","DOI":"10.1007\/BF02289694"},{"key":"e_1_2_8_47_1","doi-asserted-by":"publisher","DOI":"10.1111\/jfb.12025"},{"key":"e_1_2_8_48_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00248-015-0578-7"},{"key":"e_1_2_8_49_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.dci.2013.12.014"},{"key":"e_1_2_8_50_1","doi-asserted-by":"publisher","DOI":"10.2478\/v10208-011-0012-6"},{"key":"e_1_2_8_51_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0074581"},{"key":"e_1_2_8_52_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2015.189"},{"key":"e_1_2_8_53_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2014.254"},{"key":"e_1_2_8_54_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2013.200"},{"key":"e_1_2_8_55_1","doi-asserted-by":"publisher","DOI":"10.1038\/nature11550"},{"key":"e_1_2_8_56_1","doi-asserted-by":"publisher","DOI":"10.3354\/dao023039"},{"key":"e_1_2_8_57_1","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-50-2-427"},{"key":"e_1_2_8_58_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr507"},{"key":"e_1_2_8_59_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01937-13"},{"key":"e_1_2_8_60_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.aquaculture.2010.02.007"},{"key":"e_1_2_8_61_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0104505"},{"key":"e_1_2_8_62_1","doi-asserted-by":"publisher","DOI":"10.1007\/BF00038690"},{"key":"e_1_2_8_63_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00248-004-0097-4"},{"key":"e_1_2_8_64_1","doi-asserted-by":"publisher","DOI":"10.1577\/H06-039.1"},{"key":"e_1_2_8_65_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2109.2010.02546.x"},{"key":"e_1_2_8_66_1","doi-asserted-by":"publisher","DOI":"10.2478\/som-1996-0001"},{"key":"e_1_2_8_67_1","unstructured":"OksanenJ. BlanchetF.G. KindtR. LegendreP. MinchinP.R. O'HaraR.B. SimpsonG.L. SolymosP. StevensM.H.H.&WagnerH.(2011)vegan: Community Ecology Package. R package version 2.0\u20100."},{"key":"e_1_2_8_68_1","doi-asserted-by":"publisher","DOI":"10.3354\/dao02324"},{"key":"e_1_2_8_69_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.seares.2008.06.001"},{"key":"e_1_2_8_70_1","doi-asserted-by":"publisher","DOI":"10.1128\/MMBR.62.4.1094-1156.1998"},{"key":"e_1_2_8_71_1","doi-asserted-by":"publisher","DOI":"10.1111\/anu.12346"},{"key":"e_1_2_8_72_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2011.38"},{"key":"e_1_2_8_73_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00248-006-9037-9"},{"key":"e_1_2_8_74_1","doi-asserted-by":"publisher","DOI":"10.3354\/dao071255"},{"key":"e_1_2_8_75_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01541-09"},{"key":"e_1_2_8_76_1","doi-asserted-by":"publisher","DOI":"10.1111\/mec.13177"},{"key":"e_1_2_8_77_1","doi-asserted-by":"publisher","DOI":"10.1007\/BF00042888"},{"key":"e_1_2_8_78_1","doi-asserted-by":"publisher","DOI":"10.1093\/femsle\/fnu060"},{"key":"e_1_2_8_79_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0067061"},{"key":"e_1_2_8_80_1","first-page":"1","article-title":"Tenacibaculum finnmarkense sp. nov., a fish pathogenic bacterium of the family Flavobacteriaceae isolated from Atlantic salmon","author":"Sm\u00e5ge S.","year":"2015","journal-title":"Antonie van Leeuwenhoek"},{"key":"e_1_2_8_81_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-294X.2012.05552.x"},{"key":"e_1_2_8_82_1","first-page":"108","article-title":"S\u00e5rproblematikk og hudhelse i laks\u2010 og regnbue\u00f8rrettoppdrett","author":"Takle H.R.","year":"2015","journal-title":"Nofima report 5\/2015"},{"key":"e_1_2_8_83_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.aquaculture.2011.01.020"},{"key":"e_1_2_8_84_1","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msr121"},{"key":"e_1_2_8_85_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01646-12"},{"key":"e_1_2_8_86_1","doi-asserted-by":"publisher","DOI":"10.1080\/08997659.2014.922513"},{"key":"e_1_2_8_87_1","doi-asserted-by":"publisher","DOI":"10.1186\/s12866-016-0864-7"},{"key":"e_1_2_8_88_1","doi-asserted-by":"publisher","DOI":"10.1126\/science.1218344"},{"key":"e_1_2_8_89_1","doi-asserted-by":"publisher","DOI":"10.1016\/0044-8486(93)90295-A"},{"key":"e_1_2_8_90_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.micpath.2009.06.005"},{"key":"e_1_2_8_91_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01821-12"},{"key":"e_1_2_8_92_1","doi-asserted-by":"publisher","DOI":"10.1111\/1574-6941.12174"},{"key":"e_1_2_8_93_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2014.225"},{"key":"e_1_2_8_94_1","doi-asserted-by":"publisher","DOI":"10.1556\/AVet.54.2006.2.6"},{"key":"e_1_2_8_95_1","doi-asserted-by":"publisher","DOI":"10.1111\/jam.12514"},{"key":"e_1_2_8_96_1","first-page":"1","article-title":"Atlantic salmon (Salmo salar L.) gastrointestinal microbial community dynamics in relation to digesta properties and diet","author":"Zarkasi K.Z.","year":"2016","journal-title":"Microbial Ecology"}],"container-title":["Journal of Fish Diseases"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.wiley.com\/onlinelibrary\/tdm\/v1\/articles\/10.1111%2Fjfd.12632","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1111\/jfd.12632","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,9,18]],"date-time":"2023-09-18T00:22:10Z","timestamp":1694996530000},"score":1,"resource":{"primary":{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/10.1111\/jfd.12632"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,4,27]]},"references-count":95,"journal-issue":{"issue":"11","published-print":{"date-parts":[[2017,11]]}},"alternative-id":["10.1111\/jfd.12632"],"URL":"https:\/\/doi.org\/10.1111\/jfd.12632","archive":["Portico"],"relation":{},"ISSN":["0140-7775","1365-2761"],"issn-type":[{"value":"0140-7775","type":"print"},{"value":"1365-2761","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,4,27]]}}}