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As part of an integrated pest management approach, farms coordinate procedures within spatial units. We present observations of copepodids being at relatively greater density than nauplii in upper waters, which informs the development of surface layer sea lice transmission modelling of Loch Linnhe, Scotland, for informing farm parasite management. A hydrodynamic model is coupled with a biological particle\u2010tracking model, with characteristics of plankton sea lice. Simulations are undertaken for May and October 2011\u20132013, forced by local wind data collected for those periods. Particles are continually released from positions representing farm locations, weighted by relative farm counts, over a 2\u2010week period and tracked for a further 5\u00a0days. A comparison is made between modelled relative concentrations against physical and biological surveys to provide confidence in model outputs. Connectivity between farm locations is determined in order to propose potential coordination areas. Generally, connectivity depends on flow patterns in the loch and decreases with increased farm separation. The connectivity indices are used to estimate the origins of the sea lice population composition at each site, which may influence medicinal regimens to avoid loss of efficacy.<\/jats:p>","DOI":"10.1111\/jfd.12693","type":"journal-article","created":{"date-parts":[[2017,8,7]],"date-time":"2017-08-07T09:52:47Z","timestamp":1502099567000},"page":"901-919","source":"Crossref","is-referenced-by-count":27,"title":["Using biological\u2013physical modelling for informing sea lice dispersal in Loch Linnhe, Scotland"],"prefix":"10.1111","volume":"41","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-5919-1847","authenticated-orcid":false,"given":"N K G","family":"Salama","sequence":"first","affiliation":[{"name":"Marine Scotland Science Marine Laboratory Aberdeen UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"A C","family":"Dale","sequence":"additional","affiliation":[{"name":"Scottish Marine Institute The Scottish Association for Marine Science Oban UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"V V","family":"Ivanov","sequence":"additional","affiliation":[{"name":"Arctic and Antarctic Research Institute St. Petersburg Russia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"P F","family":"Cook","sequence":"additional","affiliation":[{"name":"Marine Scotland Science Marine Laboratory Aberdeen UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"C C","family":"Pert","sequence":"additional","affiliation":[{"name":"Marine Scotland Science Marine Laboratory Aberdeen UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"C M","family":"Collins","sequence":"additional","affiliation":[{"name":"Marine Scotland Science Marine Laboratory Aberdeen UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"B","family":"Rabe","sequence":"additional","affiliation":[{"name":"Marine Scotland Science Marine Laboratory Aberdeen UK"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2017,8,7]]},"reference":[{"key":"e_1_2_7_2_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.pt.2014.12.006"},{"key":"e_1_2_7_3_1","doi-asserted-by":"publisher","DOI":"10.3354\/aei00052"},{"key":"e_1_2_7_4_1","doi-asserted-by":"publisher","DOI":"10.3354\/aei00133"},{"key":"e_1_2_7_5_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0064039"},{"key":"e_1_2_7_6_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2761.2008.00980.x"},{"key":"e_1_2_7_7_1","doi-asserted-by":"publisher","DOI":"10.1080\/17451000.2013.810755"},{"key":"e_1_2_7_8_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1751-8369.2002.tb00078.x"},{"key":"e_1_2_7_9_1","doi-asserted-by":"publisher","DOI":"10.1111\/jfd.12069"},{"key":"e_1_2_7_10_1","doi-asserted-by":"publisher","DOI":"10.1016\/S1054-3139(97)80020-3"},{"key":"e_1_2_7_11_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.icesjms.2006.04.017"},{"key":"e_1_2_7_12_1","doi-asserted-by":"publisher","DOI":"10.3354\/dao071201"},{"key":"e_1_2_7_13_1","doi-asserted-by":"publisher","DOI":"10.1002\/ps.490"},{"key":"e_1_2_7_14_1","volume-title":"A code of good practice for Scottish finfish aquaculture","author":"Code of Good Practice Management Group","year":"2015"},{"key":"e_1_2_7_15_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2761.2008.01011.x"},{"key":"e_1_2_7_16_1","doi-asserted-by":"publisher","DOI":"10.1007\/978-94-017-1041-1"},{"key":"e_1_2_7_17_1","volume-title":"Introduction to geophysical fluid dynamics","author":"Cushman\u2010Roisin B.","year":"1994"},{"key":"e_1_2_7_18_1","volume-title":"Scottish sea loch catalogue","author":"Edwards A.","year":"1986"},{"key":"e_1_2_7_19_1","doi-asserted-by":"publisher","DOI":"10.1016\/0079-6611(83)90004-6"},{"key":"e_1_2_7_20_1","doi-asserted-by":"crossref","first-page":"1649","DOI":"10.1242\/jeb.203.11.1649","article-title":"Ontogenetic changes in visual sensitivity of the parasitic salmon louse Lepeophtheirus salmonis","volume":"203","author":"Flamarique I. 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