{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T21:46:51Z","timestamp":1790027211796,"version":"4.0.1"},"reference-count":74,"publisher":"Wiley","issue":"2","license":[{"start":{"date-parts":[[2015,6,12]],"date-time":"2015-06-12T00:00:00Z","timestamp":1434067200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["NSFC#30990243"],"award-info":[{"award-number":["NSFC#30990243"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Graduate Student Innovation Fund","award":["12SSXT130"],"award-info":[{"award-number":["12SSXT130"]}]},{"name":"the Program for Introducing Talents to Universities","award":["#B07017"],"award-info":[{"award-number":["#B07017"]}]},{"name":"the State Key Basic Research and Development Plan of China","award":["2013CBA01404"],"award-info":[{"award-number":["2013CBA01404"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["JIPB"],"published-print":{"date-parts":[[2016,2]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:sec><jats:label\/><jats:p>Interspecific hybridization is a driving force in evolution and speciation of higher plants. Interspecific hybridization often induces immediate and saltational changes in gene expression, a phenomenon collectively termed \u201ctranscriptome shock\u201d. Although transcriptome shock has been reported in various plant and animal taxa, the extent and pattern of shock\u2010induced expression changes are often highly idiosyncratic, and hence entails additional investigations. Here, we produced a set of interspecific F1 triploid hybrid plants between <jats:italic>Oryza sativa<\/jats:italic>, ssp. <jats:italic>japonica<\/jats:italic> (2<jats:italic>n<\/jats:italic>\u2009=\u20092<jats:italic>x<\/jats:italic>\u2009=\u200924, genome AA) and the tetraploid form of <jats:italic>O. punctata<\/jats:italic> (2<jats:italic>n<\/jats:italic>\u2009=\u20094<jats:italic>x<\/jats:italic>\u2009=\u200948, genome, BBCC), and conducted RNA\u2010seq transcriptome profiling of the hybrids and their exact parental plants. We analyzed both homeolog expression bias and overall gene expression level difference in the hybrids relative to the <jats:italic>in silico<\/jats:italic> \u201chybrids\u201d (parental mixtures). We found that approximately 16% (2,541) of the 16,112 expressed genes in leaf tissue of the F1 hybrids showed nonadditive expression, which were specifically enriched in photosynthesis\u2010related pathways. Interestingly, changes in the maternal homeolog expression, including non\u2010stochastic silencing, were the major causes for altered homeolog expression partitioning in the F1 hybrids. Our findings have provided further insights into the transcriptome response to interspecific hybridization and heterosis.<\/jats:p><\/jats:sec>","DOI":"10.1111\/jipb.12357","type":"journal-article","created":{"date-parts":[[2015,4,1]],"date-time":"2015-04-01T18:25:22Z","timestamp":1427912722000},"page":"150-164","source":"Crossref","is-referenced-by-count":43,"title":["Transcriptome shock in an interspecific F1 triploid hybrid of <i>Oryza<\/i> revealed by RNA sequencing"],"prefix":"10.1111","volume":"58","author":[{"given":"Ying","family":"Wu","sequence":"first","affiliation":[{"name":"Key Laboratory of Molecular Epigenetics of the Ministry of Education (MOE) Northeast Normal University Changchun 130024 China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yue","family":"Sun","sequence":"additional","affiliation":[{"name":"Key Laboratory of Molecular Epigenetics of the Ministry of Education (MOE) Northeast Normal University Changchun 130024 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Northeast Normal University Changchun 130024 China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bao","family":"Liu","sequence":"additional","affiliation":[{"name":"Key Laboratory of Molecular Epigenetics of the Ministry of Education (MOE) Northeast Normal University Changchun 130024 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