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In the case of anticancer drugs, tumour cell alterations can have a great impact on drug activity and, in fact, most biomarkers predicting response originate from these cells. On the other hand, the risk of developing severe toxicity may be related to the genetic background of the patient. Thus, understanding the molecular characteristics of both the tumour and the patient, and establishing their relation with drug outcomes will be critical for the identification of predictive biomarkers and to provide the basis for individualized treatments. This is a complex scenario where multiple genes as well as pathophysiological and environmental factors are important; in addition, tumours exhibit large inter\u2010 and intraindividual variability in space and time. Against this background, the huge amounts of biological and genetic data generated by the high\u2010throughput technologies will facilitate pharmacogenomic progress, suggest novel druggable molecules and support the design of future strategies aimed at disease control. Here, we will review the current challenges and opportunities for pharmacogenomic studies in oncology, as well as the clinically established biomarkers. Lung and renal cancer, two areas in which huge progress has been made in the last decade, will be used to illustrate advances in personalized cancer treatment; we will review <jats:italic><jats:styled-content style=\"fixed-case\">EGFR<\/jats:styled-content><\/jats:italic> mutation as the paradigm of targeted therapies in lung cancer, and discuss the dissection of lung cancer into clinically relevant molecular subsets and novel advances that suggest an important role of single nucleotide polymorphisms in the response to antiangiogenic agents, as well as the challenges that remain in these fields. Finally, we will present new approaches and future prospects for personalizing medicine in oncology.<\/jats:p>","DOI":"10.1111\/joim.12321","type":"journal-article","created":{"date-parts":[[2014,10,23]],"date-time":"2014-10-23T14:33:50Z","timestamp":1414074830000},"page":"201-217","source":"Crossref","is-referenced-by-count":69,"title":["Pharmacogenomic biomarkers for personalized cancer treatment"],"prefix":"10.1111","volume":"277","author":[{"given":"C.","family":"Rodr\u00edguez\u2010Antona","sequence":"first","affiliation":[{"name":"Hereditary Endocrine Cancer Group Spanish National Cancer Research Centre (CNIO) Madrid Spain"},{"name":"ISCIII Center for Biomedical Research on Rare Diseases (CIBERER) Madrid Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M.","family":"Taron","sequence":"additional","affiliation":[{"name":"Medical Oncology Service and Laboratory Pangaea Biotech SL Quiron Dexeus Universitary Hospital Barcelona 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