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Recent studies on human and mice highlighted the importance of \u201cmycobiota\u201d in the metabolism and gut health of host, but our knowledge on the fungal composition and distribution in swine gut is very limited. In the current study, the fungal community in the caecal and colonic digesta from five weaned piglets was analysed based on an Illumina HiSeq 2500 platform targeting the internal transcribed spacer 1 region, and its relationship with the concentration of short\u2010chain fatty acids was also investigated. Results revealed that the fungal profile in the caecal and colonic digesta of the piglets was distinct, and the caecal fungal diversity was significantly higher (<jats:italic>p<\/jats:italic>\u00a0&lt;\u00a0.05). Basidiomycota and Ascomycota were the two predominant fungal phyla in the caecum and colon of the piglets. Comparing with that in colon, the abundance of <jats:italic>Saccharomycopsis<\/jats:italic>, <jats:italic>Wallemia<\/jats:italic> and <jats:italic>Mrakia<\/jats:italic> showed significantly higher (<jats:italic>p<\/jats:italic>\u00a0&lt;\u00a0.05), and the abundance of <jats:italic>Scheffersomyces<\/jats:italic>, <jats:italic>Aspergillus<\/jats:italic>, <jats:italic>Penicillium<\/jats:italic> and <jats:italic>Mucor<\/jats:italic> was significantly lower in the caecum (<jats:italic>p<\/jats:italic>\u00a0&lt;\u00a0.05). Canonical correspondence analysis showed a correlation between the fungal community and the concentration of isobutyrate, isovalerate, propionate and acetate in the digesta samples. Spearman's correlation indicated that the low\u2010abundance genera, <jats:italic>Fusarium<\/jats:italic>, <jats:italic>Plectosphaerella<\/jats:italic> and <jats:italic>Metarhizium<\/jats:italic>, were positively correlated with of isobutyrate (<jats:italic>p<\/jats:italic>\u00a0&lt;\u00a0.05), while <jats:italic>Xeromyces<\/jats:italic> were negatively correlated with acetate (<jats:italic>p<\/jats:italic>\u00a0&lt;\u00a0.05), and <jats:italic>Cornuvesica<\/jats:italic> was negatively correlated with both acetate and propionate (<jats:italic>p<\/jats:italic>\u00a0&lt;\u00a0.05). Results illuminated a probable interaction between the fungal composition and the bacterial degradation of protein and complex carbohydrates in the diet. These findings would be helpful to enhance our understanding of fungi in swine gut and provide a foundation for future work on the function of mycobiota in pigs.<\/jats:p>","DOI":"10.1111\/jpn.13300","type":"journal-article","created":{"date-parts":[[2020,1,14]],"date-time":"2020-01-14T10:36:05Z","timestamp":1578998165000},"page":"616-628","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":23,"title":["The fungal community and its interaction with the concentration of short\u2010chain fatty acids in the caecum and colon of weaned piglets"],"prefix":"10.1111","volume":"104","author":[{"given":"Jiayan","family":"Li","sequence":"first","affiliation":[{"name":"Key Laboratory for Animal Disease\u2010Resistance Nutrition of Ministry of Education of China Chengdu China"},{"name":"Key Laboratory for Animal Disease\u2010Resistance Nutrition and Feed of Ministry of Agriculture of China Chengdu China"},{"name":"Key laboratory of Animal 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