{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,6]],"date-time":"2026-10-06T13:24:38Z","timestamp":1791293078833,"version":"4.1.0"},"reference-count":73,"publisher":"Wiley","issue":"13","license":[{"start":{"date-parts":[[2016,6,6]],"date-time":"2016-06-06T00:00:00Z","timestamp":1465171200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"},{"start":{"date-parts":[[2015,9,1]],"date-time":"2015-09-01T00:00:00Z","timestamp":1441065600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/doi.wiley.com\/10.1002\/tdm_license_1.1"}],"content-domain":{"domain":["wiley.com"],"crossmark-restriction":true},"short-container-title":["Molecular Ecology"],"published-print":{"date-parts":[[2016,7]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    Ecophenotypic differentiation among replicate ecotype pairs within a species complex is often attributed to independent outcomes of parallel divergence driven by adaptation to similar environmental contrasts. However, the extent to which parallel phenotypic and genetic divergence patterns have emerged independently is increasingly questioned by population genomic studies. Here, we document the extent of genetic differentiation within and among two geographic replicates of the coastal and marine ecotypes of the European anchovy (\n                    <jats:italic>Engraulis encrasicolus<\/jats:italic>\n                    ) gathered from Atlantic and Mediterranean locations. Using a genome\u2010wide data set of\n                    <jats:styled-content style=\"fixed-case\">RAD<\/jats:styled-content>\n                    \u2010derived\n                    <jats:styled-content style=\"fixed-case\">SNP<\/jats:styled-content>\n                    s, we show that habitat type (marine vs. coastal) is the most important component of genetic differentiation among populations of anchovy. By analysing the joint allele frequency spectrum of each coastal\u2013marine ecotype pair, we show that genomic divergence patterns between ecotypes can be explained by a postglacial secondary contact following a long period of allopatric isolation (\n                    <jats:italic>c<\/jats:italic>\n                    . 300\u00a0kyrs). We found strong support for a model including heterogeneous migration among loci, suggesting that secondary gene flow has eroded past differentiation at different rates across the genome. Markers experiencing reduced introgression exhibited strongly correlated differentiation levels among Atlantic and Mediterranean regions. These results support that partial reproductive isolation and parallel genetic differentiation among replicate pairs of anchovy ecotypes are largely due to a common divergence history prior to secondary contact. They moreover provide comprehensive insights into the origin of a surprisingly strong fine\u2010scale genetic structuring in a high gene flow marine fish, which should improve stock management and conservation actions.\n                  <\/jats:p>","DOI":"10.1111\/mec.13627","type":"journal-article","created":{"date-parts":[[2016,3,30]],"date-time":"2016-03-30T19:08:06Z","timestamp":1459364886000},"page":"3187-3202","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":127,"title":["Parallel genetic divergence among coastal\u2013marine ecotype pairs of European anchovy explained by differential introgression after secondary contact"],"prefix":"10.1111","volume":"25","author":[{"given":"A.","family":"Le Moan","sequence":"first","affiliation":[{"name":"Universit\u00e9 Montpellier 2 Place Eug\u00e8ne Bataillon Montpellier 34095 France"},{"name":"ISEM \u2013 CNRS, UMR 5554, SMEL 2 rue des Chantiers S\u00e8te 34200 France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"P.\u2010A.","family":"Gagnaire","sequence":"additional","affiliation":[{"name":"Universit\u00e9 Montpellier 2 Place Eug\u00e8ne Bataillon Montpellier 34095 France"},{"name":"ISEM \u2013 CNRS, UMR 5554, SMEL 2 rue des Chantiers S\u00e8te 34200 France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"F.","family":"Bonhomme","sequence":"additional","affiliation":[{"name":"Universit\u00e9 Montpellier 2 Place Eug\u00e8ne Bataillon Montpellier 34095 France"},{"name":"ISEM \u2013 CNRS, UMR 5554, SMEL 2 rue des Chantiers S\u00e8te 34200 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