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Despite the increasing interest in seafloor massive sulphides exploitation, there have been no population genomic studies conducted on vent meiofauna, which are known to contribute over 50% to metazoan biodiversity at vents. To bridge this knowledge gap, restriction\u2010site\u2010associated DNA sequencing, specifically 2b\u2010RADseq, was used to retrieve thousands of genome\u2010wide single\u2010nucleotide polymorphisms (SNPs) from abundant populations of the vent\u2010obligate copepod <jats:italic>Stygiopontius lauensis<\/jats:italic> from the Lau Basin. SNPs were used to investigate population structure, demographic histories and genotype\u2013environment associations at a basin scale. Genetic analyses also helped to evaluate the suitability of tailored larval dispersal models and the parameterization of life\u2010history traits that better fit the population patterns observed in the genomic dataset for the target organism. Highly structured populations were observed on both spatial and temporal scales, with divergence of populations between the north, mid, and south of the basin estimated to have occurred after the creation of the major transform fault dividing the Australian and the Niuafo'ou tectonic plate (350 kya), with relatively recent secondary contact events (&lt;20 kya). Larval dispersal models were able to predict the high levels of structure and the highly asymmetric northward low\u2010level gene flow observed in the genomic data. These results differ from most studies conducted on megafauna in the region, elucidating the need to incorporate smaller size when considering site prospecting for deep\u2010sea exploitation of seafloor massive sulphides, and the creation of area\u2010based management tools to protect areas at risk of local extinction, should mining occur.<\/jats:p>","DOI":"10.1111\/mec.17340","type":"journal-article","created":{"date-parts":[[2024,4,12]],"date-time":"2024-04-12T07:30:45Z","timestamp":1712907045000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["Highly structured populations of copepods at risk to deep\u2010sea mining: Integration of genomic data with demogenetic and biophysical modelling"],"prefix":"10.1111","volume":"33","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-1116-9568","authenticated-orcid":false,"given":"Coral","family":"Diaz\u2010Recio\u00a0Lorenzo","sequence":"first","affiliation":[{"name":"Adaptation et Diversit\u00e9 en Milieu Marin (AD2M), Station Biologique de Roscoff Sorbonne Universit\u00e9, CNRS  Roscoff France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4247-9622","authenticated-orcid":false,"given":"Adrien","family":"Tran\u00a0Lu\u00a0Y","sequence":"additional","affiliation":[{"name":"UMR MARBEC, University of Montpellier, IRD, Ifremer, CNRS  S\u00e8te France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Otis","family":"Brunner","sequence":"additional","affiliation":[{"name":"Okinawa Institute for Science and Technology  Kunigami\u2010gun Okinawa Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pedro Mart\u00ednez","family":"Arbizu","sequence":"additional","affiliation":[{"name":"Senckenberg am Meer, German Centre for Marine Biodiversity Research  Wilhelmshaven Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Didier","family":"Jollivet","sequence":"additional","affiliation":[{"name":"Adaptation et Diversit\u00e9 en Milieu Marin (AD2M), Station Biologique de Roscoff Sorbonne Universit\u00e9, CNRS  Roscoff France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stefan","family":"Laurent","sequence":"additional","affiliation":[{"name":"BioNTech  Mainz Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sabine","family":"Gollner","sequence":"additional","affiliation":[{"name":"NIOZ Royal Netherlands Institute for Sea Research and Utrecht University  't Horntje (Texel) The Netherlands"},{"name":"Utrecht University  Utrecht The Netherlands"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"311","published-online":{"date-parts":[[2024,4,12]]},"reference":[{"key":"e_1_2_10_2_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471\u20102105\u201012\u2010246"},{"key":"e_1_2_10_3_1","doi-asserted-by":"publisher","DOI":"10.1002\/ece3.2110"},{"key":"e_1_2_10_4_1","first-page":"245","volume-title":"Geophysical monograph series","author":"Baker E. 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