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Here we integrate genomic data, geometric morphometric analyses and thermal tolerance experiments to explore the role of Pleistocene climatic changes and adaptation to alpine environments on patterns of genomic and phenotypic variation in diving beetles from the taxonomically complex <jats:italic>Agabus bipustulatus<\/jats:italic> species group. Genetic structure and phylogenomic analyses revealed the presence of three geographically cohesive lineages, two representing trans\u2010Palearctic and Iberian populations of the elevation\u2010generalist <jats:italic>A. bipustulatus<\/jats:italic> and another corresponding to the strictly\u2010alpine <jats:italic>A. nevadensis<\/jats:italic>, a narrow\u2010range endemic taxon from the Sierra Nevada mountain range in southeastern Iberia. The best\u2010supported model of lineage divergence, along with the existence of pervasive genetic introgression and admixture in secondary contact zones, is consistent with a scenario of population isolation and connectivity linked to Quaternary climatic oscillations. Our results suggest that <jats:italic>A. nevadensis<\/jats:italic> is an alpine ecotype of <jats:italic>A. bipustulatus<\/jats:italic>, whose genotypic, morphological and physiological differentiation likely resulted from an interplay between population isolation and local altitudinal adaptation. Remarkably, within the Iberian Peninsula, such ecotypic differentiation is unique to Sierra Nevada populations and has not been replicated in other alpine populations of <jats:italic>A. bipustulatus.<\/jats:italic> Collectively, our study supports fast ecotypic differentiation and incipient speciation processes within the study complex and points to Pleistocene glaciations and local adaptation along elevational gradients as key drivers of biodiversity generation in alpine environments.<\/jats:p>","DOI":"10.1111\/mec.17487","type":"journal-article","created":{"date-parts":[[2024,8,7]],"date-time":"2024-08-07T08:15:52Z","timestamp":1723018552000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["Genomic, morphological and physiological data support fast ecotypic differentiation and incipient speciation in an alpine diving beetle"],"prefix":"10.1111","volume":"33","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-8677-7475","authenticated-orcid":false,"given":"Susana","family":"Pallar\u00e9s","sequence":"first","affiliation":[{"name":"Department of Zoology University of Seville  Seville Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2709-429X","authenticated-orcid":false,"given":"Joaqu\u00edn","family":"Ortego","sequence":"additional","affiliation":[{"name":"Department of Ecology and Evolution Estaci\u00f3n Biol\u00f3gica de Do\u00f1ana, EBD\u2010CSIC  Seville Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jos\u00e9 Antonio","family":"Carbonell","sequence":"additional","affiliation":[{"name":"Department of Zoology University of Seville  Seville Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eduardo","family":"Franco\u2010Fuentes","sequence":"additional","affiliation":[{"name":"Department of Zoology University of Seville  Seville Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David T.","family":"Bilton","sequence":"additional","affiliation":[{"name":"School of Biological and Marine Sciences University of Plymouth  Plymouth UK"},{"name":"Department of Zoology University of Johannesburg  Johannesburg South Africa"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andr\u00e9s","family":"Mill\u00e1n","sequence":"additional","affiliation":[{"name":"Department of Ecology and Hydrology University of Murcia  Murcia Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pedro","family":"Abell\u00e1n","sequence":"additional","affiliation":[{"name":"Department of Zoology University of Seville  Seville Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2024,8,7]]},"reference":[{"key":"e_1_2_10_2_1","doi-asserted-by":"publisher","DOI":"10.1111\/bij.12309"},{"key":"e_1_2_10_3_1","doi-asserted-by":"publisher","DOI":"10.1111\/2041-210X.12035"},{"key":"e_1_2_10_4_1","doi-asserted-by":"publisher","DOI":"10.1098\/rstb.2008.0053"},{"key":"e_1_2_10_5_1","doi-asserted-by":"publisher","DOI":"10.1111\/php.12889"},{"key":"e_1_2_10_6_1","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2664.2003.00841.x"},{"key":"e_1_2_10_7_1","doi-asserted-by":"publisher","DOI":"10.1080\/00949650215733"},{"key":"e_1_2_10_8_1","doi-asserted-by":"publisher","DOI":"10.3897\/compcytogen.v7i2.5223"},{"key":"e_1_2_10_9_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41561-018-0236-z"},{"key":"e_1_2_10_10_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2699.2011.02641.x"},{"key":"e_1_2_10_11_1","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-030-94219-9_2"},{"key":"e_1_2_10_12_1","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-294X.2003.01731.x"},{"key":"e_1_2_10_13_1","doi-asserted-by":"publisher","DOI":"10.1186\/jbiol90"},{"key":"e_1_2_10_14_1","volume-title":"British water beetles","author":"Balfour\u2010Browne W. 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