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The extent to which adaptation and speciation are facilitated by reorganisation of the recombination landscape remains untested in many systems. Marine ecosystems, with their dynamic and fluid habitats, offer a compelling context to investigate genomic divergence. In this study, we mapped genomic divergence and selection across recombination landscapes of parapatric marine snail sister species that we show have recently undergone secondary contact. Regions of reduced recombination were enriched for genes exhibiting signatures of negative selection, whereas regions of high recombination were associated with genes under putative positive selection. Notably, the recombination landscape of the population in parapatry of one species (\n                    <jats:italic>Scurria viridula<\/jats:italic>\n                    ) differs markedly from that of the other population within this same species, highlighting the role of introgression in reshaping recombination landscapes. In the other species (\n                    <jats:italic>Scurria zebrina<\/jats:italic>\n                    ), conservation of the recombination landscape and divergent selection among populations suggest trapping of beneficial allele combinations in regions of low recombination maintains the identity of this species. Among species, signals of divergence with gene flow consistently cluster within specific genomic regions characterised by high recombination rate variation among the populations of\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>S. viridula<\/jats:italic>\n                    <\/jats:styled-content>\n                    . These results challenge traditional theoretical expectations of recombination evolution by showing that the causes of genomic divergence can be population\u2010specific. This study demonstrates that recombination landscapes are key modulators of genomic divergence, with contemporary evolutionary shifts that could enable populations to adapt to distinct environments. Our findings provide new insights into the interplay between recombination, selection, and gene flow during speciation, underscoring the complexity of evolutionary trajectories in marine systems.\n                  <\/jats:p>","DOI":"10.1111\/mec.70108","type":"journal-article","created":{"date-parts":[[2025,9,22]],"date-time":"2025-09-22T05:11:17Z","timestamp":1758517877000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["Mapping Species Birth Across the Recombination Landscapes of Marine Snails"],"prefix":"10.1111","volume":"34","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3297-3013","authenticated-orcid":false,"given":"Emily C.","family":"Giles","sequence":"first","affiliation":[{"name":"Instituto de Ciencias Ambientales y Evolutivas Universidad Austral de Chile  Valdivia Chile"},{"name":"Doctorado en Ciencias Menci\u00f3n Ecolog\u00eda y Evoluci\u00f3n, Escuela de Graduados, Facultad de Ciencias Universidad Austral de Chile  Valdivia Chile"},{"name":"Molecular Surveillance Cawthron Institute  Nelson New Zealand"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8410-1121","authenticated-orcid":false,"given":"Romuald","family":"Laso\u2010Jadart","sequence":"additional","affiliation":[{"name":"Institut de Syst\u00e9matique, Evolution, Biodiversit\u00e9 (ISYEB), Mus\u00e9um National D'histoire Naturelle, EPHE\u2010PSL, Universit\u00e9 PSL, CNRS, SU, UA  Paris France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7493-416X","authenticated-orcid":false,"given":"Daniel","family":"Ortiz\u2010Barrientos","sequence":"additional","affiliation":[{"name":"School of the Environment, and ARC Centre of Excellence for Plant Success in Nature and Agriculture The University of Queensland  St Lucia Queensland Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Paulina Carim\u00e1n","family":"Soto","sequence":"additional","affiliation":[{"name":"Instituto de Ciencias Ambientales y Evolutivas Universidad Austral de Chile  Valdivia Chile"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Erwan","family":"Delrieu\u2010Trottin","sequence":"additional","affiliation":[{"name":"CEFE, Univ Monpellier, CNRS, EPHE\u2010PSL University, IRD  Montpellier France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5703-7662","authenticated-orcid":false,"given":"Marie Laure","family":"Guillemin","sequence":"additional","affiliation":[{"name":"Instituto de Ciencias Ambientales y Evolutivas Universidad Austral de Chile  Valdivia Chile"},{"name":"N\u00facleo Milenio MASH, Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias Universidad Austral e Chile  Valdivia Chile"},{"name":"Centro FONDAP de Investigaci\u00f3n de Ecosistemas Marinos de Altas Latitudes (IDEAL)  Valdivia Chile"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stefano","family":"Mona","sequence":"additional","affiliation":[{"name":"Institut de Syst\u00e9matique, Evolution, Biodiversit\u00e9 (ISYEB), Mus\u00e9um National D'histoire Naturelle, EPHE\u2010PSL, Universit\u00e9 PSL, CNRS, SU, UA  Paris France"},{"name":"EPHE, PSL Research University  Paris France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xavier","family":"Pochon","sequence":"additional","affiliation":[{"name":"Molecular Surveillance Cawthron Institute  Nelson New Zealand"},{"name":"Institute of Marine Science University of Auckland  Auckland New Zealand"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8197-2861","authenticated-orcid":false,"given":"Pablo","family":"Saenz\u2010Agudelo","sequence":"additional","affiliation":[{"name":"Instituto de Ciencias Ambientales y Evolutivas Universidad Austral de Chile  Valdivia Chile"},{"name":"Molecular Surveillance Cawthron Institute  Nelson New Zealand"},{"name":"Millennium Nucleus for Ecology and Conservation of Temperate Mesophotic Reefs (NUTME)  Las Cruces Chile"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2025,9,21]]},"reference":[{"key":"e_1_2_10_2_1","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msaa038"},{"key":"e_1_2_10_3_1","doi-asserted-by":"publisher","DOI":"10.3354\/meps10293"},{"key":"e_1_2_10_4_1","doi-asserted-by":"publisher","DOI":"10.1111\/1365-2656.12917"},{"key":"e_1_2_10_5_1","unstructured":"Alexa A. andJ.Rahnenfuhrer.2023.\u201ctopGO: Enrichment Analysis for Gene Ontology. 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