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However, numerous comparative studies across diverse taxa have revealed that homomorphy can persist over long evolutionary time scales. Similarly, recent reports of unexpectedly rapid Y chromosome degeneration, particularly in species with evolved X chromosome dosage compensation, suggest alternative evolutionary trajectories that challenge the assumption of gradual decay. However, the mechanisms and consequences of rapid Y chromosome degeneration remain unclear. The\n                    <jats:italic>Poecilia<\/jats:italic>\n                    genus presents a valuable comparative system to investigate these processes, particularly within a clade that shares a recent origin of XY sex chromosomes but exhibits striking variation in sex chromosome morphology. Here, we present a chromosome\u2010scale assembly of a male\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>P. picta<\/jats:italic>\n                    <\/jats:styled-content>\n                    genome using PacBio HiFi reads and Omni\u2010C data to investigate the extent and consequences of rapid Y\u2010chromosome degeneration. We find that the Y chromosome is substantially smaller than the X (28.8\u2009Mb vs. 32.6\u2009Mb), contains fewer genes (470 vs. 985) and is heavily enriched in transposable elements, particularly autonomous Helitrons. This degeneration is accompanied by structural divergence and reduced synteny. Concurrently, we document gene traffic from the X chromosome to the autosomes, including male\u2010benefitting genes such as\n                    <jats:italic>bbof1<\/jats:italic>\n                    and\n                    <jats:italic>ssna1<\/jats:italic>\n                    , suggesting a compensatory response to hemizygosity. Together, these results demonstrate rapid structural and functional divergence of the sex chromosomes in\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>P. picta<\/jats:italic>\n                    <\/jats:styled-content>\n                    and provide new insights into the dynamics of rapid sex chromosome differentiation.\n                  <\/jats:p>","DOI":"10.1111\/mec.70353","type":"journal-article","created":{"date-parts":[[2026,4,27]],"date-time":"2026-04-27T11:45:47Z","timestamp":1777290347000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Structural and Functional Divergence of the\n                    <scp>\n                      <i>Poecilia picta<\/i>\n                    <\/scp>\n                    Sex Chromosomes"],"prefix":"10.1111","volume":"35","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9844-2960","authenticated-orcid":false,"given":"Jo\u00eblle","family":"Lafond","sequence":"first","affiliation":[{"name":"Department of Zoology and Biodiversity Research Centre University of British Columbia  Vancouver British Columbia Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7057-5588","authenticated-orcid":false,"given":"Yuying","family":"Lin","sequence":"additional","affiliation":[{"name":"Department of Zoology and Biodiversity Research Centre University of British Columbia  Vancouver British Columbia Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0349-4371","authenticated-orcid":false,"given":"Lydia J. 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