{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,30]],"date-time":"2026-09-30T08:00:04Z","timestamp":1790755204028,"version":"4.1.0"},"reference-count":108,"publisher":"Wiley","issue":"18","license":[{"start":{"date-parts":[[2026,9,16]],"date-time":"2026-09-16T00:00:00Z","timestamp":1789516800000},"content-version":"vor","delay-in-days":15,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/doi.wiley.com\/10.1002\/tdm_license_1.1"}],"funder":[{"DOI":"10.13039\/501100001665","name":"Agence Nationale de la Recherche","doi-asserted-by":"publisher","award":["ANR\u201021\u2010CE20\u20100005"],"award-info":[{"award-number":["ANR\u201021\u2010CE20\u20100005"]}],"id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Molecular Ecology"],"published-print":{"date-parts":[[2026,9]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n                  <jats:p>\n                    The domestication of perennial crops in the Mediterranean Basin remains unclear, particularly regarding the genomic consequences of human\u2010mediated demographic shifts and selection. We analysed 8.1 million single nucleotide polymorphisms from 96 cultivated almond (\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>Prunus dulcis<\/jats:italic>\n                    <\/jats:styled-content>\n                    ) accessions from Europe, North America, Central Asia, and New Zealand, alongside four wild relatives. Population structure analyses revealed four geographically differentiated cultivated groups (Central Asian, North American, and two European) and three wild populations (\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>P. spinosissima<\/jats:italic>\n                    <\/jats:styled-content>\n                    ,\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>P. orientalis<\/jats:italic>\n                    <\/jats:styled-content>\n                    , and\n                    <jats:italic>P. fenzliana<\/jats:italic>\n                    ). Cultivated almonds retained high genetic diversity, consistent with weak domestication bottlenecks typical of outcrossing perennials. Elevated diversity and private allele counts in Central Asian cultivars, together with limited evidence of crop\u2013wild gene flow, support Central Asia as an important reservoir of ancestral cultivated diversity that may have played a major role during the early stages of almond domestication. In contrast, allele sharing consistent with historical wild\u2010to\u2010crop introgression\u2014especially involving\n                    <jats:italic>\n                      <jats:styled-content style=\"fixed-case\">P.<\/jats:styled-content>\n                      orientalis\n                    <\/jats:italic>\n                    \u2014has contributed to the genomic composition of European and North American almonds. Genome\u2010wide scans for selective sweeps showed most genes overlapping candidate sweep regions were population\u2010specific, though often associated with similar biological functions, including stress responses and agronomic traits. This suggests repeated targeting of comparable pathways during and post\u2010domestication, despite distinct selection histories. Notably, a subset of candidate genes detected in cultivated populations also occurs in wild relatives, particularly\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>P. orientalis<\/jats:italic>\n                    <\/jats:styled-content>\n                    . This overlap is consistent with shared ancestral variation, introgression\/gene flow between wild and cultivated lineages, and\/or parallel adaptation. Altogether, our results support a complex domestication and diversification history for almonds, shaped by geographic expansion, gene flow with wild relatives, and recurrent selection acting in different regions. This study highlights wild relatives as important reservoirs of genetic diversity and emphasises the need for broader geographic sampling to clarify their contributions to almond domestication and adaptation.\n                  <\/jats:p>","DOI":"10.1111\/mec.70544","type":"journal-article","created":{"date-parts":[[2026,9,17]],"date-time":"2026-09-17T04:29:26Z","timestamp":1789619366000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Population Genomics of Almond (\n                    <i>Prunus dulcis<\/i>\n                    ) Reveals Region\u2010Specific Selection and a Complex History of Domestication"],"prefix":"10.1111","volume":"35","author":[{"given":"C.","family":"Lougmani","sequence":"first","affiliation":[{"name":"Universit\u00e9 Paris\u2010Saclay, INRAE, CNRS, AgroParisTech, UMR GQE\u2010Le Moulon  Gif\u2010sur\u2010Yvette France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8470-2610","authenticated-orcid":false,"given":"A.","family":"Mesnil","sequence":"additional","affiliation":[{"name":"Universit\u00e9 Paris\u2010Saclay, INRAE, CNRS, AgroParisTech, UMR GQE\u2010Le Moulon  Gif\u2010sur\u2010Yvette France"},{"name":"Division of Science New York University Abu Dhabi  Abu Dhabi UAE"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0002-8166-824X","authenticated-orcid":false,"given":"R.","family":"Fahmy","sequence":"additional","affiliation":[{"name":"Division of Science New York University Abu Dhabi  Abu Dhabi UAE"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6745-6350","authenticated-orcid":false,"given":"V.","family":"Decroocq","sequence":"additional","affiliation":[{"name":"Universit\u00e9 de Bordeaux, INRAE, UMR 1332 Biologie du Fruit et Pathologie  Villenave d'Ornon France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2092-7586","authenticated-orcid":false,"given":"Q. 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