{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,30]],"date-time":"2026-09-30T07:59:51Z","timestamp":1790755191864,"version":"4.1.0"},"reference-count":126,"publisher":"Wiley","issue":"18","license":[{"start":{"date-parts":[[2026,9,20]],"date-time":"2026-09-20T00:00:00Z","timestamp":1789862400000},"content-version":"vor","delay-in-days":19,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/doi.wiley.com\/10.1002\/tdm_license_1.1"}],"content-domain":{"domain":["onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Molecular Ecology"],"published-print":{"date-parts":[[2026,9]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n                  <jats:p>\n                    Genomic mechanisms explaining why some hybrid zones remain stable while others collapse into hybrid swarms are poorly understood. In Montana's Kootenai River Basin, native interior redband trout (\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>Oncorhynchus mykiss gairdneri<\/jats:italic>\n                    <\/jats:styled-content>\n                    ; IRT) and westslope cutthroat trout (\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>O. lewisi<\/jats:italic>\n                    <\/jats:styled-content>\n                    ; WCT) are naturally sympatric and historically exhibited limited hybridization. However, the introduction of allopatric coastal rainbow trout (\n                    <jats:italic>O. m.<\/jats:italic>\n                    ssp.; CRT) has coincided with hybrid swarm formation. Using novel IRT linkage maps and 3489 individuals genotyped at 189,984 SNPs, we characterized the role of genome structure in hybridization among native and invasive taxa. Native IRT were fixed for the derived arrangement of a double inversion complex on chromosome 5 (Chr05), whereas introduced CRT and intraspecific hybrids retained the ancestral polymorphism associated with migratory behaviour. Widespread hybridization was primarily driven by intraspecific admixture among rainbow trout (RBT) taxa, rather than with other species, likely mediated by genomic structural variants introduced into IRT populations via CRT admixture. Specifically, Chr05 genotypes exhibited strong habitat stratification; migratory\u2010associated haplotypes occurred primarily in migration\u2010associated habitats, implicating dispersal as a key mechanism promoting introgression. We found evidence of selection against interspecific hybrids, possibly tied to interspecific inversions. Notably, WCT carried a distinct form of Chr05 that is colinear with the ancestral RBT form. Interspecific hybrids carrying both the WCT and ancestral RBT forms (WCT\n                    <jats:sub>A<\/jats:sub>\n                    \/RBT\n                    <jats:sub>A<\/jats:sub>\n                    ), despite being structurally homozygous, were rare (1.59%), suggesting selection or stronger genomic incompatibility. Ultimately, introduced intraspecific variation may facilitate introgression via dispersal while distinct interspecific structural arrangements maintain genomic barriers, restricting gene flow.\n                  <\/jats:p>","DOI":"10.1111\/mec.70556","type":"journal-article","created":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T04:45:50Z","timestamp":1789965950000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Inversion Polymorphisms Carried by Introduced Rainbow Trout Disrupt Hybrid Zones Between Native Species"],"prefix":"10.1111","volume":"35","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-5851-3250","authenticated-orcid":false,"given":"Craig D.","family":"Wells","sequence":"first","affiliation":[{"name":"Bioinformatics and Computational Biology University of Idaho  Moscow Idaho USA"},{"name":"Wildlife Biology Program, W.A. Franke College of Forestry and Conservation University of Montana  Missoula Montana USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8982-3278","authenticated-orcid":false,"given":"Seth R.","family":"Smith","sequence":"additional","affiliation":[{"name":"Wildlife Biology Program, W.A. Franke College of Forestry and Conservation University of Montana  Missoula Montana USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7587-3004","authenticated-orcid":false,"given":"Marty","family":"Kardos","sequence":"additional","affiliation":[{"name":"Flathead Lake Biological Station, Division of Biological Sciences University of Montana  Polson Montana USA"},{"name":"Northwest Fisheries Science Center, National Marine Fisheries Service National Oceanic and Atmospheric Administration  Seattle Washington USA"},{"name":"Department of Biology, Graduate Degree Program in Ecology Colorado State University  Fort Collins Colorado USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1913-8144","authenticated-orcid":false,"given":"Stephen J.","family":"Amish","sequence":"additional","affiliation":[{"name":"The University of Montana Fish and Wildlife Genomics Laboratory  Missoula Montana USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Angela","family":"Lodmell","sequence":"additional","affiliation":[{"name":"The University of Montana Fish and Wildlife Genomics Laboratory  Missoula Montana USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sally","family":"Painter","sequence":"additional","affiliation":[{"name":"The University of Montana Fish and Wildlife Genomics Laboratory  Missoula Montana USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Brian","family":"Stephens","sequence":"additional","affiliation":[{"name":"Montana Fish, Wildlife &amp; Parks  Libby Montana USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"James","family":"Dunnigan","sequence":"additional","affiliation":[{"name":"Montana Fish, Wildlife &amp; Parks  Libby Montana USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Scott","family":"Relyea","sequence":"additional","affiliation":[{"name":"Sekokini Springs Hatchery Montana Fish, Wildlife &amp; Parks  Kalispell Montana USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jason","family":"Nachtmann","sequence":"additional","affiliation":[{"name":"Murray Springs Hatchery Montana Fish, Wildlife &amp; Parks  Eureka Montana USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7616-0161","authenticated-orcid":false,"given":"Paul A.","family":"Hohenlohe","sequence":"additional","affiliation":[{"name":"Bioinformatics and Computational Biology University of Idaho  Moscow Idaho USA"},{"name":"Department of Biological Sciences University of Idaho  Moscow Idaho USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Matthew C.","family":"Boyer","sequence":"additional","affiliation":[{"name":"Montana Fish, Wildlife &amp; Parks  Kalispell Montana USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ryan P.","family":"Kovach","sequence":"additional","affiliation":[{"name":"The University of Montana Fish and Wildlife Genomics Laboratory  Missoula Montana USA"},{"name":"Montana Fish, Wildlife &amp; Parks  Missoula Montana USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8159-6381","authenticated-orcid":false,"given":"Andrew R.","family":"Whiteley","sequence":"additional","affiliation":[{"name":"Wildlife Biology Program, W.A. 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