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White\u2010nose syndrome (WNS) has decimated bat populations across North America over the last two decades. Demographic and physiological evidence of adaptation in one heavily affected species,\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>Myotis lucifugus<\/jats:italic>\n                    <\/jats:styled-content>\n                    , has prompted multiple attempts to delineate the genomic underpinnings, but these studies show little congruence in their findings. This may be due, in part, to the limitations of the genomic resources utilized and\/or analytical approaches employed. Here, we performed high\u2010coverage whole\u2010genome resequencing of\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>M. lucifugus<\/jats:italic>\n                    <\/jats:styled-content>\n                    sampled prior to (\n                    <jats:italic>n<\/jats:italic>\n                    \u2009=\u200929), and 10\u2009years after the local arrival of WNS (\n                    <jats:italic>n<\/jats:italic>\n                    \u2009=\u200930), aligned to a new reference genome to identify signatures of selection associated with adaptive responses. Using 41.9 million SNPs, we implemented a combination of hard and soft sweep detection analyses, leading to the discovery of 382 genes with robust evidence of selection. Of these, 202 (49.9%) were associated with enriched gene ontology (GO) terms, many of which were tied to neuron development, organization and function. Further, approximately half (107) of genes associated with enriched GO terms interact with genes identified by previous studies. Our findings suggest reduced susceptibility to WNS is mediated through highly complex, polygenic mechanisms. Further, we demonstrate there are far more connections among WNS selection study results than previously recognized. We believe that the methods employed by our study illustrate a need for a paradigm shift in non\u2010model selection studies and further highlight the value of genomics as a tool for conservation management.\n                  <\/jats:p>","DOI":"10.1111\/mec.70559","type":"journal-article","created":{"date-parts":[[2026,9,24]],"date-time":"2026-09-24T06:05:01Z","timestamp":1790229901000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["A Multifaceted Approach Reveals Complex Genomic Mediation of White\u2010Nose Syndrome Adaptive Response in the Little Brown Bat (\n                    <scp>\n                      <i>Myotis lucifugus<\/i>\n                    <\/scp>\n                    )"],"prefix":"10.1111","volume":"35","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-5014-5919","authenticated-orcid":false,"given":"Samantha L. R.","family":"Capel","sequence":"first","affiliation":[{"name":"Wildlife Genetics Research Unit, Wildlife Health Laboratory California Department of Fish and Wildlife  Sacramento California USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4838-7107","authenticated-orcid":false,"given":"Devaughn L.","family":"Fraser","sequence":"additional","affiliation":[{"name":"Wildlife Genetics Research Unit, Wildlife Health Laboratory California Department of Fish and Wildlife  Sacramento California USA"},{"name":"Connecticut Department of Energy and Environmental Protection  Hartford Connecticut USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7417-4386","authenticated-orcid":false,"given":"Kenneth A.","family":"Field","sequence":"additional","affiliation":[{"name":"Department of Biology Bucknell University  Lewisburg Pennsylvania USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8651-2012","authenticated-orcid":false,"given":"DeeAnn M.","family":"Reeder","sequence":"additional","affiliation":[{"name":"Department of Biology Bucknell University  Lewisburg Pennsylvania USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2936-1112","authenticated-orcid":false,"given":"Amy L.","family":"Russell","sequence":"additional","affiliation":[{"name":"Department of Biology Grand Valley State University  Allendale Michigan USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9573-8248","authenticated-orcid":false,"given":"Peter H.","family":"Sudmant","sequence":"additional","affiliation":[{"name":"Department of Integrative Biology University of California Berkeley  Berkeley California USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8341-2390","authenticated-orcid":false,"given":"Juan Manuel","family":"Vazquez","sequence":"additional","affiliation":[{"name":"Department of Integrative Biology University of California Berkeley  Berkeley California USA"},{"name":"Department of Biology The Pennsylvania State University  University Park Pennsylvania USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6747-0523","authenticated-orcid":false,"given":"Maarten J.","family":"Vonhof","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences and School of Environment, Geography, &amp; Sustainability Western Michigan University  Kalamazoo Michigan USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5864-4958","authenticated-orcid":false,"given":"Thomas M.","family":"Lilley","sequence":"additional","affiliation":[{"name":"BatLab Finland, Finnish Museum of Natural History Luomus University of Helsinki  Helsinki Finland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5917-3577","authenticated-orcid":false,"given":"Michael R.","family":"Buchalski","sequence":"additional","affiliation":[{"name":"Wildlife Genetics Research Unit, Wildlife Health Laboratory California Department of Fish and Wildlife  Sacramento California USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2026,9,23]]},"reference":[{"key":"e_1_2_11_2_1","doi-asserted-by":"publisher","DOI":"10.1111\/mec.12609"},{"key":"e_1_2_11_3_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0068646"},{"key":"e_1_2_11_4_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41598\u2010020\u201059797\u20104"},{"key":"e_1_2_11_5_1","doi-asserted-by":"publisher","DOI":"10.1139\/z04\u2010057"},{"key":"e_1_2_11_6_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41576\u2010020\u20100250\u2010z"},{"key":"e_1_2_11_7_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.tpb.2017.06.001"},{"key":"e_1_2_11_8_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41598\u2010022\u201026181\u20103"},{"key":"e_1_2_11_9_1","doi-asserted-by":"publisher","DOI":"10.2307\/1379807"},{"key":"e_1_2_11_10_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt019"},{"key":"e_1_2_11_11_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp101"},{"key":"e_1_2_11_12_1","doi-asserted-by":"publisher","DOI":"10.1126\/science.1163874"},{"key":"e_1_2_11_13_1","doi-asserted-by":"publisher","DOI":"10.1111\/mec.15989"},{"key":"e_1_2_11_14_1","unstructured":"Broad Institute.2024a.\u201cGenotype Refinement Workflow for Germline Short Variants.\u201dGenome Analysis Toolkit (GATK) Technical Documentation.https:\/\/gatk.broadinstitute.org\/hc\/en\u2010us\/articles\/360035531432\u2010Genotype\u2010Refinement\u2010workflow\u2010for\u2010germline\u2010short\u2010variants."},{"key":"e_1_2_11_15_1","unstructured":"Broad Institute.2024b.\u201cHard\u2010Filtering Germline Short Variants.\u201dGenome Analysis Toolkit (GATK) Technical Documentation.https:\/\/gatk.broadinstitute.org\/hc\/en\u2010us\/articles\/360035890471\u2010Hard\u2010filtering\u2010germline\u2010short\u2010variants."},{"key":"e_1_2_11_16_1","doi-asserted-by":"publisher","DOI":"10.1186\/1479-7364-5-1-30"},{"key":"e_1_2_11_17_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.ajhg.2021.08.005"},{"key":"e_1_2_11_18_1","doi-asserted-by":"publisher","DOI":"10.1023\/B:BGEN.0000038022.65024.d8"},{"key":"e_1_2_11_19_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365\u2010294X.2007.03283.x"},{"key":"e_1_2_11_20_1","volume-title":"Invasive Bat Fungus Confirmed in Five California Counties","author":"California Department of Fish and Wildlife","year":"2024"},{"key":"e_1_2_11_21_1","doi-asserted-by":"publisher","DOI":"10.3201\/eid2309.170875"},{"key":"e_1_2_11_22_1","doi-asserted-by":"publisher","DOI":"10.1007\/s10592\u2010021\u201001412\u20108"},{"key":"e_1_2_11_23_1","doi-asserted-by":"publisher","DOI":"10.1101\/gr.100545.109"},{"key":"e_1_2_11_24_1","doi-asserted-by":"publisher","DOI":"10.1111\/1365\u20102656.12954"},{"key":"e_1_2_11_25_1","doi-asserted-by":"publisher","DOI":"10.1111\/cobi.13739"},{"key":"e_1_2_11_26_1","doi-asserted-by":"publisher","DOI":"10.4161\/fly.19695"},{"key":"e_1_2_11_27_1","doi-asserted-by":"publisher","DOI":"10.1007\/s11046\u2010013\u20109716\u20102"},{"key":"e_1_2_11_28_1","doi-asserted-by":"publisher","DOI":"10.1098\/rspb.2023.0368"},{"key":"e_1_2_11_29_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1558-5646.1955.tb01531.x"},{"key":"e_1_2_11_30_1","doi-asserted-by":"publisher","DOI":"10.1098\/rstb.2016.0167"},{"key":"e_1_2_11_31_1","doi-asserted-by":"publisher","DOI":"10.3390\/cells10081873"},{"key":"e_1_2_11_32_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr330"},{"key":"e_1_2_11_33_1","doi-asserted-by":"publisher","DOI":"10.1093\/gigascience\/giab008"},{"key":"e_1_2_11_34_1","doi-asserted-by":"publisher","DOI":"10.1080\/21505594.2020.1768018"},{"key":"e_1_2_11_35_1","doi-asserted-by":"publisher","DOI":"10.1111\/mec.16643"},{"key":"e_1_2_11_36_1","doi-asserted-by":"publisher","DOI":"10.1111\/eva.70020"},{"key":"e_1_2_11_37_1","doi-asserted-by":"publisher","DOI":"10.1111\/eva.12514"},{"key":"e_1_2_11_38_1","unstructured":"Dray S. 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