{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,5]],"date-time":"2026-10-05T08:35:11Z","timestamp":1791189311489,"version":"4.1.0"},"reference-count":61,"publisher":"Wiley","issue":"4","license":[{"start":{"date-parts":[[2014,1,7]],"date-time":"2014-01-07T00:00:00Z","timestamp":1389052800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Molecular Microbiology"],"published-print":{"date-parts":[[2014,2]]},"abstract":"<jats:title>Summary<\/jats:title><jats:p>We show that thiols in the 4\u2010cysteine zinc\u2010finger motif of <jats:styled-content style=\"fixed-case\">DksA<\/jats:styled-content>, an <jats:styled-content style=\"fixed-case\">RNA<\/jats:styled-content> polymerase accessory protein known to regulate the stringent response, sense oxidative and nitrosative stress. Hydrogen peroxide\u2010 or nitric oxide (<jats:styled-content style=\"fixed-case\"><jats:roman>NO<\/jats:roman><\/jats:styled-content>)\u2010mediated modifications of thiols in the <jats:styled-content style=\"fixed-case\">DksA<\/jats:styled-content> 4\u2010cysteine zinc\u2010finger motif release the metal cofactor and drive reversible changes in the \u03b1\u2010helicity of the protein. Wild\u2010type and <jats:italic><jats:styled-content style=\"fixed-case\"><jats:italic>relA<\/jats:italic><\/jats:styled-content> <jats:styled-content style=\"fixed-case\"><jats:italic>spoT<\/jats:italic><\/jats:styled-content><\/jats:italic> mutant <jats:styled-content style=\"fixed-case\"><jats:italic>S<\/jats:italic><\/jats:styled-content><jats:italic>almonella<\/jats:italic>, but not isogenic <jats:styled-content style=\"fixed-case\"><jats:italic>dksA<\/jats:italic><\/jats:styled-content>\u2010deficient bacteria, experience the downregulation of r\u2010protein and amino acid transport expression after <jats:styled-content style=\"fixed-case\"><jats:roman>NO<\/jats:roman><\/jats:styled-content> treatment, suggesting that <jats:styled-content style=\"fixed-case\">DksA<\/jats:styled-content> can regulate gene expression in response to <jats:styled-content style=\"fixed-case\"><jats:roman>NO<\/jats:roman><\/jats:styled-content> congeners independently of the <jats:styled-content style=\"fixed-case\">ppGpp<\/jats:styled-content> alarmone. Oxidative stress enhances the <jats:styled-content style=\"fixed-case\">DksA<\/jats:styled-content>\u2010dependent repression of <jats:styled-content style=\"fixed-case\"><jats:italic>rpsM<\/jats:italic><\/jats:styled-content>, while preventing the activation of <jats:styled-content style=\"fixed-case\"><jats:italic>livJ<\/jats:italic><\/jats:styled-content> and <jats:styled-content style=\"fixed-case\"><jats:italic>hisG<\/jats:italic><\/jats:styled-content> gene transcription that is supported by reduced, zinc\u2010bound <jats:styled-content style=\"fixed-case\">DksA<\/jats:styled-content>. The inhibitory effects of oxidized <jats:styled-content style=\"fixed-case\">DksA<\/jats:styled-content> on transcription are reversible with dithiothreitol. Our investigations indicate that sensing of reactive species by <jats:styled-content style=\"fixed-case\">DksA<\/jats:styled-content> redox active thiols fine\u2010tunes the expression of translational machinery and amino acid assimilation and biosynthesis in accord with the metabolic stress imposed by oxidative and nitrosative stress. Given the conservation of <jats:styled-content style=\"fixed-case\">Cys<\/jats:styled-content><jats:sup>114<\/jats:sup>, and neighbouring hydrophobic and charged amino acids in <jats:styled-content style=\"fixed-case\">DksA<\/jats:styled-content> orthologues, phylogenetically diverse microorganisms may use the <jats:styled-content style=\"fixed-case\">DksA<\/jats:styled-content> thiol switch to regulate transcriptional responses to oxidative and nitrosative stress.<\/jats:p>","DOI":"10.1111\/mmi.12498","type":"journal-article","created":{"date-parts":[[2013,12,20]],"date-time":"2013-12-20T07:22:46Z","timestamp":1387524166000},"page":"790-804","source":"Crossref","is-referenced-by-count":68,"title":["The 4\u2010cysteine zinc\u2010finger motif of the <scp>RNA<\/scp> polymerase regulator <scp>DksA<\/scp> serves as a thiol switch for sensing oxidative and nitrosative stress"],"prefix":"10.1111","volume":"91","author":[{"given":"Calvin A.","family":"Henard","sequence":"first","affiliation":[{"name":"Department of Microbiology University of Colorado School of Medicine  Aurora CO USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Timothy","family":"Tapscott","sequence":"additional","affiliation":[{"name":"Department of Microbiology University of Colorado School of Medicine  Aurora CO USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Matthew A.","family":"Crawford","sequence":"additional","affiliation":[{"name":"Department of Microbiology University of Colorado School of Medicine  Aurora CO USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Maroof","family":"Husain","sequence":"additional","affiliation":[{"name":"Department of Microbiology University of Colorado School of Medicine  Aurora CO USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Paschalis\u2010Thomas","family":"Doulias","sequence":"additional","affiliation":[{"name":"Children's Hospital of Philadelphia Research Institute Department of Pediatrics and Pharmacology Perelman School of Medicine University of Pennsylvania  Philadelphia PA USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Steffen","family":"Porwollik","sequence":"additional","affiliation":[{"name":"Department of Pathology and Laboratory Medicine University of California  Irvine CA USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lin","family":"Liu","sequence":"additional","affiliation":[{"name":"Department of Microbiology University of Colorado School of Medicine  Aurora CO USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michael","family":"McClelland","sequence":"additional","affiliation":[{"name":"Department of Pathology and Laboratory Medicine University of California  Irvine CA USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Harry","family":"Ischiropoulos","sequence":"additional","affiliation":[{"name":"Children's Hospital of Philadelphia Research Institute Department of Pediatrics and Pharmacology Perelman School of Medicine University of Pennsylvania  Philadelphia PA USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andr\u00e9s","family":"V\u00e1zquez\u2010Torres","sequence":"additional","affiliation":[{"name":"Department of Microbiology University of Colorado School of Medicine  Aurora CO USA"},{"name":"Veterans Affairs Eastern Colorado Health Care System  Denver CO USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2014,1,7]]},"reference":[{"key":"e_1_2_6_2_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2958.2008.06115.x"},{"key":"e_1_2_6_3_1","doi-asserted-by":"publisher","DOI":"10.1128\/JB.01410-08"},{"key":"e_1_2_6_4_1","doi-asserted-by":"publisher","DOI":"10.1089\/ars.2010.3400"},{"key":"e_1_2_6_5_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2003.10.065"},{"key":"e_1_2_6_6_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.87.4.1620"},{"key":"e_1_2_6_7_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0001833"},{"key":"e_1_2_6_8_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2958.2007.05964.x"},{"key":"e_1_2_6_9_1","doi-asserted-by":"publisher","DOI":"10.1038\/nchembio820"},{"key":"e_1_2_6_10_1","doi-asserted-by":"publisher","DOI":"10.1074\/mcp.M111.009506"},{"key":"e_1_2_6_11_1","doi-asserted-by":"publisher","DOI":"10.1089\/ars.2012.4686"},{"key":"e_1_2_6_12_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0092-8674(85)80056-8"},{"key":"e_1_2_6_13_1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/16.22.10881"},{"key":"e_1_2_6_14_1","doi-asserted-by":"publisher","DOI":"10.1089\/ars.2012.4511"},{"key":"e_1_2_6_15_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.120163297"},{"key":"e_1_2_6_16_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro1004"},{"key":"e_1_2_6_17_1","doi-asserted-by":"publisher","DOI":"10.1089\/ars.2012.4613"},{"key":"e_1_2_6_18_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.febslet.2013.01.073"},{"key":"e_1_2_6_19_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0969-2126(01)00599-8"},{"key":"e_1_2_6_20_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0040-4039(00)98368-0"},{"key":"e_1_2_6_21_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0092-8674(00)80147-6"},{"key":"e_1_2_6_22_1","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.06316-11"},{"key":"e_1_2_6_23_1","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M110.160960"},{"key":"e_1_2_6_24_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.0020336"},{"key":"e_1_2_6_25_1","doi-asserted-by":"publisher","DOI":"10.1016\/0003-2697(85)90409-9"},{"key":"e_1_2_6_26_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1005299107"},{"key":"e_1_2_6_27_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0610888104"},{"key":"e_1_2_6_28_1","doi-asserted-by":"publisher","DOI":"10.1089\/ars.2006.8.835"},{"key":"e_1_2_6_29_1","doi-asserted-by":"publisher","DOI":"10.1126\/science.3287616"},{"key":"e_1_2_6_30_1","doi-asserted-by":"publisher","DOI":"10.1126\/stke.2001.86.pl1"},{"key":"e_1_2_6_31_1","doi-asserted-by":"publisher","DOI":"10.1002\/pmic.200800385"},{"key":"e_1_2_6_32_1","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.272.44.27652"},{"key":"e_1_2_6_33_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0092-8674(02)00723-7"},{"key":"e_1_2_6_34_1","doi-asserted-by":"publisher","DOI":"10.1128\/jb.177.5.1285-1291.1995"},{"key":"e_1_2_6_35_1","doi-asserted-by":"crossref","first-page":"4724","DOI":"10.1016\/S0021-9258(18)61255-4","article-title":"\u03b1, \u03b2\u2010Dihydroxyisovalerate dehydratase. A superoxide\u2010sensitive enzyme","volume":"262","author":"Kuo C.F.","year":"1987","journal-title":"J Biol Chem"},{"key":"e_1_2_6_36_1","doi-asserted-by":"publisher","DOI":"10.1038\/nature04537"},{"key":"e_1_2_6_37_1","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M603968200"},{"key":"e_1_2_6_38_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0702081104"},{"key":"e_1_2_6_39_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1019383108"},{"key":"e_1_2_6_40_1","doi-asserted-by":"publisher","DOI":"10.1128\/JB.00621-09"},{"key":"e_1_2_6_41_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2003.08.038"},{"key":"e_1_2_6_42_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.imbio.2007.09.019"},{"key":"e_1_2_6_43_1","doi-asserted-by":"publisher","DOI":"10.1128\/JB.00330-07"},{"key":"e_1_2_6_44_1","doi-asserted-by":"publisher","DOI":"10.1084\/jem.192.2.237"},{"key":"e_1_2_6_45_1","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.274.15.10119"},{"key":"e_1_2_6_46_1","doi-asserted-by":"publisher","DOI":"10.1016\/0014-5793(94)00596-6"},{"key":"e_1_2_6_47_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.79.9.2855"},{"key":"e_1_2_6_48_1","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2958.2001.02298.x"},{"key":"e_1_2_6_49_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2004.07.009"},{"key":"e_1_2_6_50_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0501170102"},{"key":"e_1_2_6_51_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2004.06.030"},{"key":"e_1_2_6_52_1","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.micro.62.081307.162903"},{"key":"e_1_2_6_53_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1000451"},{"key":"e_1_2_6_54_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.chom.2011.06.004"},{"key":"e_1_2_6_55_1","doi-asserted-by":"publisher","DOI":"10.1186\/1472-6807-11-6"},{"key":"e_1_2_6_56_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.132285199"},{"key":"e_1_2_6_57_1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/18.20.6097"},{"key":"e_1_2_6_58_1","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M408754200"},{"key":"e_1_2_6_59_1","doi-asserted-by":"publisher","DOI":"10.1089\/ars.2012.4533"},{"key":"e_1_2_6_60_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.261348198"},{"key":"e_1_2_6_61_1","doi-asserted-by":"publisher","DOI":"10.1089\/ars.2012.4522"},{"key":"e_1_2_6_62_1","doi-asserted-by":"publisher","DOI":"10.1084\/jem.192.2.227"}],"container-title":["Molecular Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.wiley.com\/onlinelibrary\/tdm\/v1\/articles\/10.1111%2Fmmi.12498","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1111\/mmi.12498","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,10,2]],"date-time":"2023-10-02T11:53:33Z","timestamp":1696247613000},"score":1,"resource":{"primary":{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/10.1111\/mmi.12498"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,1,7]]},"references-count":61,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2014,2]]}},"alternative-id":["10.1111\/mmi.12498"],"URL":"https:\/\/doi.org\/10.1111\/mmi.12498","archive":["Portico"],"relation":{},"ISSN":["0950-382X","1365-2958"],"issn-type":[{"value":"0950-382X","type":"print"},{"value":"1365-2958","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,1,7]]}}}