{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,28]],"date-time":"2026-08-28T05:17:07Z","timestamp":1787894227009,"version":"build-2784847793"},"reference-count":32,"publisher":"Wiley","issue":"8","license":[{"start":{"date-parts":[[2026,8,13]],"date-time":"2026-08-13T00:00:00Z","timestamp":1786579200000},"content-version":"vor","delay-in-days":12,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2026,8,1]],"date-time":"2026-08-01T00:00:00Z","timestamp":1785542400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/doi.wiley.com\/10.1002\/tdm_license_1.1"}],"funder":[{"DOI":"10.13039\/100008762","name":"Genome Canada","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100008762","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100013062","name":"G\u00e9nome Qu\u00e9bec","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100013062","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001804","name":"Canada Research Chairs","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001804","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["bsppjournals.onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Molecular Plant Pathology"],"published-print":{"date-parts":[[2026,8]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n                  <jats:p>\n                    Significant yield losses in soybean production are imputable to Phytophthora root and stem rot (PRR) caused by\n                    <jats:italic>Phytophthora sojae<\/jats:italic>\n                    . Resistance to PRR relies on resistance genes (\n                    <jats:italic>Rps<\/jats:italic>\n                    ) that recognize key effectors from the pathogen, which are encoded by avirulence genes (\n                    <jats:italic>Avr<\/jats:italic>\n                    ). Key\n                    <jats:italic>Avr<\/jats:italic>\n                    haplotypes can be monitored in natural\n                    <jats:italic>P. sojae<\/jats:italic>\n                    populations and exploited to predict which resistance gene can be deployed to provide protection to the soybean crop. In this study, we reassessed the identity of the avirulence gene whose protein product is recognized by\n                    <jats:italic>Rps6<\/jats:italic>\n                    . Following extensive soil sampling and single\u2010spore isolation of a large population of\n                    <jats:italic>P. sojae<\/jats:italic>\n                    , we found two salient isolates carrying a rare recombination between the closely linked effectors\n                    <jats:italic>Avr3c<\/jats:italic>\n                    and\n                    <jats:italic>Avr4\/6<\/jats:italic>\n                    . Using a PCR assay and molecular markers, we showed that only allelic variations at the\n                    <jats:italic>Avr3c<\/jats:italic>\n                    locus were in perfect association with the phenotypes of the isolates on\n                    <jats:italic>Rps3c<\/jats:italic>\n                    ,\n                    <jats:italic>Rps4<\/jats:italic>\n                    and Rps6 resistance. Consistent with these findings, a soybean protoplast cell\u2010death assay further showed that only\n                    <jats:italic>Avr3c<\/jats:italic>\n                    , and not\n                    <jats:italic>Avr4\/6<\/jats:italic>\n                    , triggered\n                    <jats:italic>Rps6<\/jats:italic>\n                    \u2010dependent recognition. Furthermore, whole\u2010genome resequencing and\n                    <jats:italic>de novo<\/jats:italic>\n                    assembly of the two isolates revealed the full extent of this genomic rearrangement. Together, these results establish\n                    <jats:italic>Avr3c<\/jats:italic>\n                    as the bona fide avirulence gene corresponding to\n                    <jats:italic>Rps6<\/jats:italic>\n                    and offer a more reliable target for the pathotyping of\n                    <jats:italic>P. sojae<\/jats:italic>\n                    , which ultimately leads to a better deployment of resistant soybean cultivars.\n                  <\/jats:p>","DOI":"10.1111\/mpp.70326","type":"journal-article","created":{"date-parts":[[2026,8,14]],"date-time":"2026-08-14T02:21:37Z","timestamp":1786674097000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["A Rare Recombination in the\n                    <i>Phytophthora sojae<\/i>\n                    Genome Allows the Redefinition of a Major Avirulence Gene"],"prefix":"10.1111","volume":"27","author":[{"ORCID":"https:\/\/orcid.org\/0009-0008-3304-4823","authenticated-orcid":false,"given":"Yanick","family":"Asselin","sequence":"first","affiliation":[{"name":"D\u00e9partement de Phytologie Universit\u00e9 Laval  Qu\u00e9bec Qu\u00e9bec Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ad\u00e8le","family":"Deshaies","sequence":"additional","affiliation":[{"name":"D\u00e9partement de Phytologie Universit\u00e9 Laval  Qu\u00e9bec Qu\u00e9bec Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Caroline","family":"Labb\u00e9","sequence":"additional","affiliation":[{"name":"D\u00e9partement de Phytologie Universit\u00e9 Laval  Qu\u00e9bec Qu\u00e9bec Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vanessa","family":"Tremblay","sequence":"additional","affiliation":[{"name":"D\u00e9partement de Phytologie Universit\u00e9 Laval  Qu\u00e9bec Qu\u00e9bec 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