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Sometimes, this leads to systemic host colonization over long time scales without macroscopic symptoms. However, how plant\u2010pathogenic endophytes manage to establish their sustained systemic infection remains largely unknown.<\/jats:p>\n                      <\/jats:list-item>\n                      <jats:list-item>\n                        <jats:p>\n                          Here, we present a genomic and transcriptomic analysis of\n                          <jats:italic>Thecaphora thlaspeos<\/jats:italic>\n                          . This relative of the well studied grass smut\n                          <jats:italic>Ustilago maydis<\/jats:italic>\n                          is the only smut fungus adapted to Brassicaceae hosts. Its ability to overwinter with perennial hosts and its systemic plant infection including roots are unique characteristics among smut fungi.\n                        <\/jats:p>\n                      <\/jats:list-item>\n                      <jats:list-item>\n                        <jats:p>\n                          The\n                          <jats:italic>T.\u00a0thlaspeos<\/jats:italic>\n                          genome was assembled to the chromosome level. It is a typical smut genome in terms of size and genome characteristics.\n                          <jats:italic>In silico<\/jats:italic>\n                          prediction of candidate effector genes revealed common smut effector proteins and unique members. For three candidates, we have functionally demonstrated effector activity. One of these,\n                          <jats:italic>Tt<\/jats:italic>\n                          Tue1, suggests a potential link to cold acclimation. On the plant side, we found evidence for a typical immune response as it is present in other infection systems, despite the absence of any macroscopic symptoms during infection.\n                        <\/jats:p>\n                      <\/jats:list-item>\n                      <jats:list-item>\n                        <jats:p>\n                          Our findings suggest that\n                          <jats:italic>T.\u00a0thlaspeos<\/jats:italic>\n                          distinctly balances its virulence during biotrophic growth ultimately allowing for long\u2010lived infection of its perennial hosts.\n                        <\/jats:p>\n                      <\/jats:list-item>\n                    <\/jats:list>\n                  <\/jats:p>","DOI":"10.1111\/nph.15692","type":"journal-article","created":{"date-parts":[[2019,1,21]],"date-time":"2019-01-21T08:42:34Z","timestamp":1548060154000},"page":"1474-1492","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":18,"title":["Smut infection of perennial hosts: the genome and the transcriptome of the Brassicaceae smut fungus\n                    <i>Thecaphora thlaspeos<\/i>\n                    reveal functionally conserved and novel effectors"],"prefix":"10.1111","volume":"222","author":[{"given":"Kaitlyn J.","family":"Courville","sequence":"first","affiliation":[{"name":"Institute for Microbiology Cluster of Excellence on Plant Sciences Heinrich\u2010Heine University Building 26.12.01, Universit\u00e4tsstr. 1 D\u00fcsseldorf 40225 Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8947-6934","authenticated-orcid":false,"given":"Lamprinos","family":"Frantzeskakis","sequence":"additional","affiliation":[{"name":"Institute for Microbiology Cluster of Excellence on Plant Sciences Heinrich\u2010Heine University Building 26.12.01, Universit\u00e4tsstr. 1 D\u00fcsseldorf 40225 Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Summia","family":"Gul","sequence":"additional","affiliation":[{"name":"Institute for Microbiology Cluster of Excellence on Plant Sciences Heinrich\u2010Heine University Building 26.12.01, Universit\u00e4tsstr. 1 D\u00fcsseldorf 40225 Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Natalie","family":"Haeger","sequence":"additional","affiliation":[{"name":"Institute for Microbiology Cluster of Excellence on Plant Sciences Heinrich\u2010Heine University Building 26.12.01, Universit\u00e4tsstr. 1 D\u00fcsseldorf 40225 Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4618-0110","authenticated-orcid":false,"given":"Ronny","family":"Kellner","sequence":"additional","affiliation":[{"name":"Institute for Microbiology Cluster of Excellence on Plant Sciences Heinrich\u2010Heine University Building 26.12.01, Universit\u00e4tsstr. 1 D\u00fcsseldorf 40225 Germany"},{"name":"Max Planck Institute for Plant Breeding Research Carl\u2010von\u2010Linn\u00e9\u2010Weg 10 Cologne 50829 Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Natascha","family":"He\u00dfler","sequence":"additional","affiliation":[{"name":"Institute for Microbiology Cluster of Excellence on Plant Sciences Heinrich\u2010Heine University Building 26.12.01, Universit\u00e4tsstr. 1 D\u00fcsseldorf 40225 Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9880-4319","authenticated-orcid":false,"given":"Brad","family":"Day","sequence":"additional","affiliation":[{"name":"Department of Plant, Soil, and Microbial Sciences Michigan State University East Lansing MI 48824\u20106254 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0921-8041","authenticated-orcid":false,"given":"Bj\u00f6rn","family":"Usadel","sequence":"additional","affiliation":[{"name":"Unit of Botany and Molecular Genetics Institute for Biology I BioSC RWTH Aachen University 52074 Aachen Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8696-9044","authenticated-orcid":false,"given":"Yogesh K.","family":"Gupta","sequence":"additional","affiliation":[{"name":"The Sainsbury Laboratory Norwich NR4 7UH UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3667-060X","authenticated-orcid":false,"given":"H. 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