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Using standardised data from 1969 individuals representing 475 species from 32 genera across major lineages of the vascular plant tree of life, we compare conventional plastid + internal transcribed spacer (ITS) barcodes with genome skimming approaches.<\/jats:p>\n                      <\/jats:list-item>\n                      <jats:list-item>\n                        <jats:p>\n                          Standard barcoding using\n                          <jats:italic>rbcL<\/jats:italic>\n                          ,\n                          <jats:italic>matK<\/jats:italic>\n                          ,\n                          <jats:italic>trnH\u2010psbA<\/jats:italic>\n                          and ITS resolved about half of species (49.3%), with six genera showing &lt;\u200925% species discrimination. By contrast, genome skimming enabled the recovery of complete plastid genomes, yielding 57.6% species discrimination. It also generated sufficient nuclear genomic data for additional resolution from k\u2010mer analysis, achieving 66.8% species discrimination \u2013 an average gain of 17.5% over standard barcodes \u2013 while eliminating cases of extreme failure (&lt;\u200925% resolution). The recovery of complete plastomes and ribosomal DNAs from genome skims also ensures backward compatibility with existing barcode datasets.\n                        <\/jats:p>\n                      <\/jats:list-item>\n                      <jats:list-item>\n                        <jats:p>Our results demonstrate that genome skimming provides data that substantially improves species\u2010level resolution across diverse plant lineages and offers a scalable, high\u2010throughput approach for building comprehensive reference resources to support global biodiversity initiatives.<\/jats:p>\n                      <\/jats:list-item>\n                    <\/jats:list>\n                  <\/jats:p>","DOI":"10.1111\/nph.71494","type":"journal-article","created":{"date-parts":[[2026,8,14]],"date-time":"2026-08-14T03:18:03Z","timestamp":1786677483000},"page":"488-502","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Plant 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