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Here, we combined bulked segregant analysis (BSA), quantitative trait loci (QTL), and structural variation (SV) analysis to identify a 14\u2010bp deletion which caused a frame shift mutation and resulted in the\u00a0premature translation termination of a B\u2010box (BBX) family of zinc transcription factor,\n                    <jats:italic>PyBBX24<\/jats:italic>\n                    , and its allelic variation termed\n                    <jats:italic>PyBBX24<\/jats:italic>\n                    <jats:sup>\n                      <jats:italic>\u0394N14<\/jats:italic>\n                    <\/jats:sup>\n                    .\n                    <jats:italic>PyBBX24<\/jats:italic>\n                    <jats:sup>\n                      <jats:italic>\u0394N14<\/jats:italic>\n                    <\/jats:sup>\n                    overexpression promotes anthocyanin biosynthesis in pear, strawberry, Arabidopsis, tobacco, and tomato, while that of\n                    <jats:italic>PyBBX24<\/jats:italic>\n                    did not. PyBBX24\n                    <jats:sup>\u0394N14<\/jats:sup>\n                    directly activates the transcription of\n                    <jats:italic>PyUFGT<\/jats:italic>\n                    and\n                    <jats:italic>PyMYB10<\/jats:italic>\n                    through interaction with PyHY5. Moreover, stable overexpression of\n                    <jats:italic>PyBBX24<\/jats:italic>\n                    <jats:sup>\n                      <jats:italic>\u0394N14<\/jats:italic>\n                    <\/jats:sup>\n                    exhibits a dwarfing phenotype in Arabidopsis, tobacco, and tomato plants. PyBBX24\n                    <jats:sup>\u0394N14<\/jats:sup>\n                    can activate the expression of\n                    <jats:italic>PyGA2ox8<\/jats:italic>\n                    via directly binding to its promoter, thereby deactivating bioactive GAs\u00a0and reducing the plant height. However, the nuclear localization signal (NLS) and Valine\u2010Proline (VP) motifs in the C\u2010terminus of PyBBX24 reverse these effects. Interestingly, mutations leading to premature termination of PyBBX24 were also identified in red sports of un\u2010related European pear varieties. We conclude that mutations in\n                    <jats:italic>PyBBX24<\/jats:italic>\n                    gene link both an increase in pigmentation and a decrease in plant\u00a0height.\n                  <\/jats:p>","DOI":"10.1111\/pbi.14280","type":"journal-article","created":{"date-parts":[[2024,1,3]],"date-time":"2024-01-03T07:59:14Z","timestamp":1704268754000},"page":"1468-1490","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":54,"title":["Allelic variation of BBX24 is a dominant determinant controlling red coloration and dwarfism in pear"],"prefix":"10.1111","volume":"22","author":[{"given":"Guangyan","family":"Yang","sequence":"first","affiliation":[{"name":"State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture Nanjing Agricultural University  Nanjing China"},{"name":"Zhongshan Biological Breeding Laboratory  Nanjing Jiangsu China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Manyi","family":"Sun","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture Nanjing Agricultural University  Nanjing China"},{"name":"Zhongshan Biological Breeding Laboratory  Nanjing Jiangsu China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lester","family":"Brewer","sequence":"additional","affiliation":[{"name":"The New Zealand Institute for Plant &amp; 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