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The role of the latter in mitigating P deficiency is, however, still largely unknown. To shed light on this, we studied the transcriptional response to P starvation and replenishment in wild\u2010type rice and a SL mutant, <jats:italic>dwarf10<\/jats:italic> (<jats:italic>d10<\/jats:italic>), and upon exogenous application of the synthetic SL GR24. P starvation resulted in major transcriptional alterations, such as the upregulation of <jats:italic>P TRANSPORTER<\/jats:italic>, <jats:italic>SYG1\/PHO81\/XPR1<\/jats:italic> (<jats:italic>SPX<\/jats:italic>) and <jats:italic>VACUOLAR PHOSPHATE EFFLUX TRANSPORTER<\/jats:italic>. Gene Ontology (GO) analysis of the genes induced by P starvation showed enrichment in phospholipid catabolic process and phosphatase activity. In <jats:italic>d10<\/jats:italic>, P deficiency induced upregulation of genes enriched for sesquiterpenoid production, secondary shoot formation and metabolic processes, including lactone biosynthesis. Furthermore, several genes induced by GR24 treatment shared the same GO terms with P starvation\u2010induced genes, such as oxidation reduction, heme binding and oxidoreductase activity, hinting at the role that SLs play in the transcriptional reprogramming upon P starvation. Gene co\u2010expression network analysis uncovered a <jats:italic>METHYL TRANSFERASE<\/jats:italic> that displayed co\u2010regulation with known rice SL biosynthetic genes. Functional characterization showed that this gene encodes an enzyme catalyzing the conversion of carlactonoic acid to methyl carlactonoate. Our work provides a valuable resource to further studies on the response of crops to P deficiency and reveals a tool for the discovery of SL biosynthetic genes.<\/jats:p>","DOI":"10.1111\/tpj.16140","type":"journal-article","created":{"date-parts":[[2023,2,13]],"date-time":"2023-02-13T06:58:35Z","timestamp":1676271515000},"page":"355-370","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":51,"title":["Transcriptome analysis of the phosphate starvation response sheds light on strigolactone biosynthesis in rice"],"prefix":"10.1111","volume":"114","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-0100-2513","authenticated-orcid":false,"given":"Imran","family":"Haider","sequence":"first","affiliation":[{"name":"Plant Hormone Biology Group, Swammerdam Institute for Life Sciences University of Amsterdam  Science Park 904 1098\u00a0XH Amsterdam The Netherlands"},{"name":"Division of Biological and Environmental Science and Engineering, Center for Desert Agriculture, The BioActives Lab King\u00a0Abdullah University of Science and Technology  Thuwal 23955\u20106900 Saudi Arabia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhang","family":"Yunmeng","sequence":"additional","affiliation":[{"name":"Laboratory of Plant Physiology Wageningen University and Research  Wageningen PO Box 658, 6700 AR The Netherlands"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fred","family":"White","sequence":"additional","affiliation":[{"name":"Plant Hormone Biology Group, Swammerdam Institute for Life Sciences University of Amsterdam  Science Park 904 1098\u00a0XH Amsterdam The Netherlands"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Changsheng","family":"Li","sequence":"additional","affiliation":[{"name":"Plant Hormone Biology Group, Swammerdam Institute for Life Sciences University of Amsterdam  Science Park 904 1098\u00a0XH Amsterdam The Netherlands"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Roberto","family":"Incitti","sequence":"additional","affiliation":[{"name":"Computational Bioscience Research Center King Abdullah University of Science and Technology  Thuwal 23955\u20106900 Saudi Arabia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Intikhab","family":"Alam","sequence":"additional","affiliation":[{"name":"Computational Bioscience Research Center King Abdullah University of Science and Technology  Thuwal 23955\u20106900 Saudi Arabia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Takashi","family":"Gojobori","sequence":"additional","affiliation":[{"name":"Computational Bioscience Research Center King Abdullah University of Science and Technology  Thuwal 23955\u20106900 Saudi Arabia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carolien","family":"Ruyter\u2010Spira","sequence":"additional","affiliation":[{"name":"Laboratory of Plant Physiology Wageningen University and Research  Wageningen PO Box 658, 6700 AR The Netherlands"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4823-2882","authenticated-orcid":false,"given":"Salim","family":"Al\u2010Babili","sequence":"additional","affiliation":[{"name":"Division of Biological and Environmental Science and Engineering, Center for Desert Agriculture, The BioActives Lab King\u00a0Abdullah University of Science and Technology  Thuwal 23955\u20106900 Saudi Arabia"},{"name":"Division of Biological and Environmental Science and Engineering, The Plant Science Program King Abdullah University of Science and Technology  Thuwal 23955\u20106900 Saudi Arabia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0907-2732","authenticated-orcid":false,"given":"Harro J.","family":"Bouwmeester","sequence":"additional","affiliation":[{"name":"Plant Hormone Biology Group, Swammerdam Institute for Life Sciences University of Amsterdam  Science Park 904 1098\u00a0XH Amsterdam The Netherlands"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2023,2,28]]},"reference":[{"key":"e_1_2_9_2_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1410801111"},{"key":"e_1_2_9_3_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.pbi.2017.04.016"},{"key":"e_1_2_9_4_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.plantsci.2018.06.024"},{"key":"e_1_2_9_5_1","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-arplant-043014-114759"},{"key":"e_1_2_9_6_1","doi-asserted-by":"publisher","DOI":"10.1126\/science.1218094"},{"key":"e_1_2_9_7_1","doi-asserted-by":"publisher","DOI":"10.1111\/nph.16489"},{"key":"e_1_2_9_8_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-313X.2007.03210.x"},{"key":"e_1_2_9_9_1","unstructured":"Bliek T. 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