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Many species of\n                    <jats:italic>Rhodiola<\/jats:italic>\n                    have also been widely used as an important adaptogen in traditional medicines for centuries. However, a lack of high\u2010quality chromosome\u2010level genomes hinders in\u2010depth study of its evolution and biosynthetic pathway of secondary metabolites. Here, we assembled two chromosome\u2010level genomes for two\n                    <jats:italic>Rhodiola<\/jats:italic>\n                    species with different chromosome number and sexual system. The assembled genome size of\n                    <jats:italic>R. chrysanthemifolia<\/jats:italic>\n                    (2\n                    <jats:italic>n<\/jats:italic>\n                    \u2009=\u200914; hermaphrodite) and\n                    <jats:italic>R. kirilowii<\/jats:italic>\n                    (2\n                    <jats:italic>n<\/jats:italic>\n                    \u2009=\u200922; dioecious) were of 402.67 and 653.62\u2009Mb, respectively, with approximately 57.60% and 69.22% of transposable elements (TEs). The size difference between the two genomes was mostly due to proliferation of long terminal repeat\u2010retrotransposons (LTR\u2010RTs) in the\n                    <jats:italic>R. kirilowii<\/jats:italic>\n                    genome. Comparative genomic analysis revealed possible gene families responsible for high\u2010altitude adaptation of\n                    <jats:italic>Rhodiola<\/jats:italic>\n                    , including a homolog of plant cysteine oxidase 2 gene of\n                    <jats:italic>Arabidopsis thaliana<\/jats:italic>\n                    (\n                    <jats:italic>At<\/jats:italic>\n                    PCO2), which is part of the core molecular reaction to hypoxia and contributes to the stability of Group VII ethylene response factors (ERF\u2010VII). We found extensive chromosome fusion\/fission events and structural variations between the two genomes, which might have facilitated the initial rapid radiation of\n                    <jats:italic>Rhodiola<\/jats:italic>\n                    . We also identified candidate genes in the biosynthetic pathway of salidroside. Overall, our results provide important insights into genome evolution in plant rapid radiations, and possible roles of chromosome fusion\/fission and structure variation played in rapid speciation.\n                  <\/jats:p>","DOI":"10.1111\/tpj.16501","type":"journal-article","created":{"date-parts":[[2023,10,24]],"date-time":"2023-10-24T02:19:21Z","timestamp":1698113961000},"page":"464-482","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":19,"title":["Two chromosome\u2010level genome assemblies of\n                    <i>Rhodiola<\/i>\n                    shed new light on genome evolution in rapid radiation and evolution of the biosynthetic pathway of salidroside"],"prefix":"10.1111","volume":"117","author":[{"given":"Dan\u2010Qing","family":"Zhang","sequence":"first","affiliation":[{"name":"National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, College of Life Sciences Shaanxi Normal University  Xi'an 710119 China"},{"name":"Key Laboratory of Medicinal Plant Resource and Natural Pharmaceutical Chemistry of Ministry of Education Shaanxi Normal University  Xi'an 710119 China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiao\u2010Ying","family":"Liu","sequence":"additional","affiliation":[{"name":"National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, College of Life Sciences Shaanxi Normal University  Xi'an 710119 China"},{"name":"Key Laboratory of Medicinal Plant Resource and Natural Pharmaceutical Chemistry of Ministry of Education Shaanxi Normal University  Xi'an 710119 China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lin\u2010Feng","family":"Qiu","sequence":"additional","affiliation":[{"name":"National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, College of Life Sciences Shaanxi Normal University  Xi'an 710119 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Medicinal Plant Resource and Natural Pharmaceutical Chemistry of Ministry of Education Shaanxi Normal University  Xi'an 710119 China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Long","family":"Huang","sequence":"additional","affiliation":[{"name":"National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, College of Life Sciences Shaanxi Normal University  Xi'an 710119 China"},{"name":"Key Laboratory of Medicinal Plant Resource and Natural Pharmaceutical Chemistry of Ministry of Education Shaanxi Normal University  Xi'an 710119 China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shi\u2010Yu","family":"Wang","sequence":"additional","affiliation":[{"name":"National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, College of Life Sciences Shaanxi Normal University  Xi'an 710119 China"},{"name":"Key Laboratory of Medicinal Plant Resource and Natural Pharmaceutical Chemistry of Ministry of Education Shaanxi Normal University  Xi'an 710119 China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2019-1185","authenticated-orcid":false,"given":"Jian\u2010Qiang","family":"Zhang","sequence":"additional","affiliation":[{"name":"National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, College of Life Sciences Shaanxi Normal University  Xi'an 710119 China"},{"name":"Key Laboratory of Medicinal Plant Resource and Natural Pharmaceutical Chemistry of Ministry of Education Shaanxi Normal University  Xi'an 710119 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