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Plants depend on photosynthesis as their primary means to generate energy and building blocks, and adverse environmental conditions can stress the photosynthetic apparatus leading to the production of toxic byproducts. In the long term, stress experienced by the chloroplast must be communicated to the nucleus to adjust the expression of genes providing robust abiotic stress resilience in a process called retrograde signaling. Here, we propose a retrograde signaling mechanism that starts with the accumulation of phosphatidic acid at the outer chloroplast membrane. A mutant of\n                    <jats:italic>Arabidopsis thaliana<\/jats:italic>\n                    ,\n                    <jats:italic>lpp\u03b3 lpp\u025b1<\/jats:italic>\n                    , disrupted in two chloroplast envelope membrane\u2010located phosphatidic acid phosphatases, shows reduced growth and activation of abscisic acid\u2010mediated abiotic stress\u2010response pathways, among other changes, as determined by RNA\u2010Seq analysis. The mutant is more resistant to freezing and osmotic stress. To identify components of the proposed retrograde signaling pathway, we conducted a suppressor screen in the\n                    <jats:italic>lpp\u03b3 lpp\u025b1<\/jats:italic>\n                    mutant and identified a mutation that causes the loss of MED16, which is a component of Mediator, a transcriptional complex in the nucleus affecting the expression of genes involved in abiotic stress tolerance, among others. Based on these findings, we are proposing a lipid\u2010based, retrograde signaling mechanism in response to abiotic stresses such as freezing.\n                  <\/jats:p>","DOI":"10.1111\/tpj.71107","type":"journal-article","created":{"date-parts":[[2026,9,13]],"date-time":"2026-09-13T19:55:51Z","timestamp":1789329351000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["A phosphatidic acid\u2010based retrograde signaling pathway responsive to abiotic stress in Arabidopsis"],"prefix":"10.1111","volume":"127","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-0280-6676","authenticated-orcid":false,"given":"Carrie","family":"Hiser","sequence":"first","affiliation":[{"name":"MSU\u2010DOE Plant Research Laboratory  East Lansing Michigan 48824 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9835-6205","authenticated-orcid":false,"given":"Ron","family":"Cook","sequence":"additional","affiliation":[{"name":"MSU\u2010DOE Plant Research Laboratory  East Lansing Michigan 48824 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3340-9622","authenticated-orcid":false,"given":"Yosia","family":"Mugume","sequence":"additional","affiliation":[{"name":"MSU\u2010DOE Plant Research Laboratory  East Lansing Michigan 48824 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0008-2802-9290","authenticated-orcid":false,"given":"John E.","family":"Froehlich","sequence":"additional","affiliation":[{"name":"MSU\u2010DOE Plant Research Laboratory  East Lansing Michigan 48824 USA"},{"name":"Department of Biochemistry and Molecular Biology Michigan State University  East Lansing Michigan 48824 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8585-3667","authenticated-orcid":false,"given":"Christoph","family":"Benning","sequence":"additional","affiliation":[{"name":"MSU\u2010DOE Plant Research Laboratory  East Lansing Michigan 48824 USA"},{"name":"Department of Biochemistry and Molecular Biology Michigan State University  East Lansing Michigan 48824 USA"},{"name":"Department of Plant Biology Michigan State University  East Lansing Michigan 48824 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2026,9,13]]},"reference":[{"key":"e_1_2_9_2_1","doi-asserted-by":"publisher","DOI":"10.1093\/jxb\/erae029"},{"key":"e_1_2_9_3_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbalip.2009.04.006"},{"key":"e_1_2_9_4_1","doi-asserted-by":"publisher","DOI":"10.1023\/A:1005886011722"},{"key":"e_1_2_9_5_1","doi-asserted-by":"publisher","DOI":"10.1080\/07388551.2025.2475127"},{"key":"e_1_2_9_6_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0143212"},{"key":"e_1_2_9_7_1","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M405259200"},{"key":"e_1_2_9_8_1","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-313X.2003.01734.x"},{"key":"e_1_2_9_9_1","doi-asserted-by":"publisher","DOI":"10.1104\/pp.110.164152"},{"key":"e_1_2_9_10_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.ydbio.2016.06.009"},{"key":"e_1_2_9_11_1","doi-asserted-by":"crossref","unstructured":"ByteDance AML AI4Science Team Chen X. 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