{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,20]],"date-time":"2026-07-20T18:09:11Z","timestamp":1784570951553,"version":"3.55.0"},"reference-count":70,"publisher":"Wiley","issue":"8","license":[{"start":{"date-parts":[[2018,9,5]],"date-time":"2018-09-05T00:00:00Z","timestamp":1536105600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"funder":[{"DOI":"10.13039\/501100000094","name":"Ontario Ministry of Agriculture, Food and Rural Affairs","doi-asserted-by":"publisher","award":["ND2013\u20101967"],"award-info":[{"award-number":["ND2013\u20101967"]}],"id":[{"id":"10.13039\/501100000094","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Zoonoses and Public Health"],"published-print":{"date-parts":[[2018,12]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>Antimicrobial resistance is a complex issue with a large volume of published literature, and there is a need for synthesis of primary studies for an integrated understanding of this topic. Our research team aimed to have a more complete understanding of antimicrobial resistance in Canada (IAM.AMR Project) using multiple methods including the literature reviews and quantitative modelling. To accomplish this goal, qualitative features of publications (e.g., geographical location, study population) describing potential relationships between the occurrence of antimicrobial resistance and factors (e.g., antimicrobial use; management system) were of particular interest. The objectives of this review were to (a) describe the available peer\u2010reviewed literature reporting potential relationships between factors and antimicrobial resistance; and (b) to highlight data gaps. A comprehensive literature search and screening were performed to identify studies investigating factors potentially linked with antimicrobial resistance in<jats:italic>Campylobacter<\/jats:italic>species,<jats:italic>Escherichia coli<\/jats:italic>and<jats:italic>Salmonella enterica<\/jats:italic>along the farm\u2010to\u2010fork pathway (farm, abattoir (slaughter houses) and retail meats) for the major Canadian livestock species (beef cattle, broiler chicken and pigs). The literature search returned 14,966 potentially relevant titles and abstracts. Following screening of titles, abstracts and full\u2010text articles, the qualitative features of retained studies (<jats:italic>n<\/jats:italic>\u00a0=\u00a028) were extracted. The most common factors identified were antimicrobial use (<jats:italic>n<\/jats:italic>\u00a0=\u00a013 studies) and type of farm management system (e.g., antibiotic\u2010free, organic;<jats:italic>n<\/jats:italic>\u00a0=\u00a08). Most studies were conducted outside of Canada and involved investigations at the farm level. Identified data gaps included the effect of vaccination, industry\u2010specific factors (e.g., livestock density) and factors at sites other than farm along the agri\u2010food chain. Further investigation of these factors and other relevant industry activities are needed for the development of quantitative models that aim to identify effective interventions to mitigate the occurrence of antimicrobial resistance along the agri\u2010food chain.<\/jats:p>","DOI":"10.1111\/zph.12515","type":"journal-article","created":{"date-parts":[[2018,9,6]],"date-time":"2018-09-06T01:14:26Z","timestamp":1536196466000},"page":"957-971","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":46,"title":["Factors potentially linked with the occurrence of antimicrobial resistance in selected bacteria from cattle, chickens and pigs: A scoping review of publications for use in modelling of antimicrobial resistance (IAM.AMR Project)"],"prefix":"10.1111","volume":"65","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-3294-5028","authenticated-orcid":false,"given":"Colleen P.","family":"Murphy","sequence":"first","affiliation":[{"name":"Natural Sciences and Engineering Research Council Visiting Fellow Centre for Food\u2010borne, Environmental and Zoonotic Infectious Disease, Public Health Agency of Canada Guelph Ontario Canada"},{"name":"Centre for Food\u2010borne, Environmental and Zoonotic Infectious Disease, Public Health Agency of Canada Guelph Ontario Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carolee","family":"Carson","sequence":"additional","affiliation":[{"name":"Centre for Food\u2010borne, Environmental and Zoonotic Infectious Disease, Public Health Agency of Canada Guelph Ontario Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ben A.","family":"Smith","sequence":"additional","affiliation":[{"name":"Public Health Risk Sciences Division, National Microbiology Laboratory, Public Health Agency of Canada Guelph Ontario Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Brennan","family":"Chapman","sequence":"additional","affiliation":[{"name":"Public Health Risk Sciences Division, National Microbiology Laboratory, Public Health Agency of Canada Guelph Ontario Canada"},{"name":"Department of Population Medicine University of Guelph Guelph Ontario Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jayme","family":"Marrotte","sequence":"additional","affiliation":[{"name":"Centre for Food\u2010borne, Environmental and Zoonotic Infectious Disease, Public Health Agency of Canada Guelph Ontario Canada"},{"name":"Department of Population Medicine University of Guelph Guelph Ontario Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Maggie","family":"McCann","sequence":"additional","affiliation":[{"name":"Centre for Food\u2010borne, Environmental and Zoonotic Infectious Disease, Public Health Agency of Canada Guelph Ontario Canada"},{"name":"Department of Population Medicine University of Guelph Guelph Ontario Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Courtney","family":"Primeau","sequence":"additional","affiliation":[{"name":"Centre for Food\u2010borne, Environmental and Zoonotic Infectious Disease, Public Health Agency of Canada Guelph Ontario Canada"},{"name":"Department of Population Medicine University of Guelph Guelph Ontario Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Parth","family":"Sharma","sequence":"additional","affiliation":[{"name":"Centre for Food\u2010borne, Environmental and Zoonotic Infectious Disease, Public Health Agency of Canada Guelph Ontario Canada"},{"name":"Department of Population Medicine University of Guelph Guelph Ontario Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"E. Jane","family":"Parmley","sequence":"additional","affiliation":[{"name":"Centre for Food\u2010borne, Environmental and Zoonotic Infectious Disease, Public Health Agency of Canada Guelph Ontario Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2018,9,5]]},"reference":[{"key":"e_1_2_8_2_1","doi-asserted-by":"publisher","DOI":"10.1089\/fpd.2014.1742"},{"key":"e_1_2_8_3_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.prevetmed.2014.02.010"},{"key":"e_1_2_8_4_1","doi-asserted-by":"publisher","DOI":"10.1089\/fpd.2010.0566"},{"key":"e_1_2_8_5_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijfoodmicro.2009.11.008"},{"key":"e_1_2_8_6_1","doi-asserted-by":"publisher","DOI":"10.4315\/0362-028X.JFP-12-404"},{"key":"e_1_2_8_7_1","doi-asserted-by":"crossref","first-page":"290","DOI":"10.7883\/yoken.JJID.2007.290","article-title":"Association of antimicrobial resistance in Campylobacter isolated from food\u2010producing animals with antimicrobial use on farms","volume":"60","author":"Asai T.","year":"2007","journal-title":"Japanese Journal of Infectious Diseases"},{"key":"e_1_2_8_8_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.vetmic.2003.07.001"},{"key":"e_1_2_8_9_1","doi-asserted-by":"publisher","DOI":"10.4315\/0362-028X-66.4.700"},{"key":"e_1_2_8_10_1","doi-asserted-by":"publisher","DOI":"10.1136\/jech.54.5.367"},{"key":"e_1_2_8_11_1","doi-asserted-by":"publisher","DOI":"10.2460\/javma.231.2.275"},{"key":"e_1_2_8_12_1","doi-asserted-by":"publisher","DOI":"10.1089\/mdr.2014.0037"},{"key":"e_1_2_8_13_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.tvjl.2016.02.017"},{"key":"e_1_2_8_14_1","doi-asserted-by":"publisher","DOI":"10.3201\/eid1809.111515"},{"key":"e_1_2_8_15_1","unstructured":"Codes of Practice for the care and handling of farm animals(n.d.). 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