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We uncover widespread molecular dimorphism across the nervous system, including in previously unrecognized neuron-types such as the touch receptors. Neuropeptides and signaling-related genes exhibit strong sex-biased expression, particularly in males, reinforcing the notion that neuropeptides are crucial for diversifying connectome outputs. Despite these differences, neurotransmitter identities remain largely conserved, indicating that functional dimorphism arises through modulatory, not identity-defining, changes. We show that sex-biased expression of neurotransmitter-related genes correlates with bias in outgoing synaptic connectivity and identify regulatory candidates for synaptic wiring, including both shared and sex-specific genes. This dataset provides a molecular framework for understanding how subtle regulatory differences tune conserved circuits to drive sex-specific behaviors.\n                  <\/jats:p>","DOI":"10.1126\/sciadv.adv9106","type":"journal-article","created":{"date-parts":[[2025,7,11]],"date-time":"2025-07-11T17:58:29Z","timestamp":1752256709000},"update-policy":"https:\/\/doi.org\/10.34133\/aaas_crossmark","source":"Crossref","is-referenced-by-count":11,"title":["Decoding sexual dimorphism of the sex-shared nervous system at single-neuron resolution"],"prefix":"10.1126","volume":"11","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3968-6359","authenticated-orcid":true,"given":"Rizwanul","family":"Haque","sequence":"first","affiliation":[{"name":"Department of Brain Sciences, Weizmann Institute of Science, Rehovot 76100, Israel."},{"name":"Department of Molecular Neuroscience, Weizmann Institute of Science, Rehovot, 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