{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,30]],"date-time":"2026-09-30T01:39:07Z","timestamp":1790732347907,"version":"4.1.0"},"reference-count":60,"publisher":"American Society for Microbiology","issue":"11","license":[{"start":{"date-parts":[[2014,11,1]],"date-time":"2014-11-01T00:00:00Z","timestamp":1414800000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["Antimicrob Agents Chemother"],"published-print":{"date-parts":[[2014,11]]},"abstract":"ABSTRACT<\/jats:title>\n \n P1 bacteriophages lysogenize bacteria as independent plasmid-like elements. We describe here a P1-like bacteriophage, RCS47, carrying a\n bla<\/jats:italic>\n SHV-2<\/jats:sub>\n gene, isolated from a clinical strain of\n Escherichia coli<\/jats:named-content>\n from phylogroup B1, and we report the prevalence of P1-like prophages in natural\n E. coli<\/jats:named-content>\n isolates. We found that 70% of the sequence of RCS47, a 115-kb circular molecule, was common to the reference P1 bacteriophage under GenBank accession no.\n AF234172.1<\/jats:ext-link>\n , with the shared sequences being 99% identical. RCS47 had acquired two main foreign DNA fragments: a 9,636-bp fragment mobilized by two IS\n 26<\/jats:italic>\n elements containing a\n bla<\/jats:italic>\n SHV-2<\/jats:sub>\n gene, and an 8,544-bp fragment mobilized by two IS\n 5<\/jats:italic>\n elements containing an operon encoding a dimethyl sulfoxide reductase. The reference P1 prophage plasmid replication gene belonged to the IncY incompatibility group, whereas that of RCS47 was from an unknown group. The lytic capacity of RCS47 and\n bla<\/jats:italic>\n SHV-2<\/jats:sub>\n gene transduction, through the lysogenization of RCS47 in the recipient\n E. coli<\/jats:named-content>\n strains, were not demonstrated. The prevalence of P1-like prophages in various animal and human\n E. coli<\/jats:named-content>\n strain collections, as determined by the PCR detection of\n repL<\/jats:italic>\n , the lytic replication gene, was 12.6%. No differences in the prevalences of these prophages were found between extended-spectrum \u03b2-lactamase (ESBL)-producing and non-ESBL-producing strains (\n P<\/jats:italic>\n = 0.69), but this prevalence was lower in phylogroup B2 than in the other phylogroups (\n P<\/jats:italic>\n = 0.008), suggesting epistatic interactions between P1 family phages and the genetic background of\n E. coli<\/jats:named-content>\n strains. P1-like phages are part of the mobile elements that carry antibiotic resistance. The high prevalence of P1-like prophages suggests their role may be underestimated.\n <\/jats:p>","DOI":"10.1128\/aac.03183-14","type":"journal-article","created":{"date-parts":[[2014,8,19]],"date-time":"2014-08-19T01:54:44Z","timestamp":1408413284000},"page":"6550-6557","update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":107,"title":["Characterization of a P1-Like Bacteriophage Carrying an SHV-2 Extended-Spectrum \u03b2-Lactamase from an Escherichia coli Strain"],"prefix":"10.1128","volume":"58","author":[{"given":"Typhaine","family":"Billard-Pomares","sequence":"first","affiliation":[{"name":"INSERM, IAME, UMR 1137, Paris, France"},{"name":"Universit\u00e9 Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cit\u00e9, Paris, France"},{"name":"APHP, H\u00f4pital Louis Mourier, Service de Microbiologie, Colombes, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"St\u00e9phanie","family":"Fouteau","sequence":"additional","affiliation":[{"name":"Laboratoire de Finition, Institut de G\u00e9nomique, Commissariat \u00e0 l'Energie Atomique, G\u00e9noscope, Evry, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marie Elise","family":"Jacquet","sequence":"additional","affiliation":[{"name":"Laboratoire de Finition, Institut de G\u00e9nomique, Commissariat \u00e0 l'Energie Atomique, G\u00e9noscope, Evry, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David","family":"Roche","sequence":"additional","affiliation":[{"name":"Laboratoire d'Analyse Bioinformatique en G\u00e9nomique et M\u00e9tabolisme, Institut de G\u00e9nomique, Commissariat \u00e0 l'Energie Atomique, G\u00e9noscope, CNRS-UMR 8030, Evry, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Val\u00e9rie","family":"Barbe","sequence":"additional","affiliation":[{"name":"Laboratoire de Finition, Institut de G\u00e9nomique, Commissariat \u00e0 l'Energie Atomique, G\u00e9noscope, Evry, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Miguel","family":"Castellanos","sequence":"additional","affiliation":[{"name":"INSERM, IAME, UMR 1137, Paris, France"},{"name":"Universit\u00e9 Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cit\u00e9, Paris, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jean Yves","family":"Bouet","sequence":"additional","affiliation":[{"name":"Laboratoire de Microbiologie et G\u00e9n\u00e9tique Mol\u00e9culaires, CNRS UMR 5100, Toulouse, France"},{"name":"Universit\u00e9 Toulouse, Universit\u00e9 Paul Sabatier, LMGM, Toulouse, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"St\u00e9phane","family":"Cruveiller","sequence":"additional","affiliation":[{"name":"Laboratoire d'Analyse Bioinformatique en G\u00e9nomique et M\u00e9tabolisme, Institut de G\u00e9nomique, Commissariat \u00e0 l'Energie Atomique, G\u00e9noscope, CNRS-UMR 8030, Evry, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Claudine","family":"M\u00e9digue","sequence":"additional","affiliation":[{"name":"Laboratoire d'Analyse Bioinformatique en G\u00e9nomique et M\u00e9tabolisme, Institut de G\u00e9nomique, Commissariat \u00e0 l'Energie Atomique, G\u00e9noscope, CNRS-UMR 8030, Evry, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jorge","family":"Blanco","sequence":"additional","affiliation":[{"name":"Laboratorio de Referencia de E. coli (LREC), Departamento de Microbiolox\u00eda e Parasitolox\u00eda, Facultade de Veterinaria, Universidade de Santiago de Compostela (USC), Lugo, Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Olivier","family":"Clermont","sequence":"additional","affiliation":[{"name":"INSERM, IAME, UMR 1137, Paris, France"},{"name":"Universit\u00e9 Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cit\u00e9, Paris, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Erick","family":"Denamur","sequence":"additional","affiliation":[{"name":"INSERM, IAME, UMR 1137, Paris, France"},{"name":"Universit\u00e9 Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cit\u00e9, Paris, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Catherine","family":"Branger","sequence":"additional","affiliation":[{"name":"INSERM, IAME, UMR 1137, Paris, France"},{"name":"Universit\u00e9 Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cit\u00e9, Paris, France"},{"name":"APHP, H\u00f4pital Louis Mourier, Service de Microbiologie, Colombes, France"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_3_2_2","doi-asserted-by":"crossref","unstructured":"CoqueTMBaqueroFCantonR. 2008. 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