{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,8]],"date-time":"2026-10-08T19:34:05Z","timestamp":1791488045017,"version":"4.3.4"},"reference-count":35,"publisher":"American Society for Microbiology","issue":"13","license":[{"start":{"date-parts":[[2012,7,1]],"date-time":"2012-07-01T00:00:00Z","timestamp":1341100800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["Appl Environ Microbiol"],"published-print":{"date-parts":[[2012,7]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n          <jats:p>\n            The bacterium\n            <jats:named-content content-type=\"genus-species\">Mycoplasma agalactiae<\/jats:named-content>\n            is responsible for contagious agalactia (CA) in small domestic ruminants, a syndrome listed by the World Organization for Animal Health and responsible for severe damage to the dairy industry. Recently, we frequently isolated this pathogen from lung lesions of ibexes during a mortality episode in the French Alps. This situation was unusual in terms of host specificity and tissue tropism, raising the question of\n            <jats:named-content content-type=\"genus-species\">M. agalactiae<\/jats:named-content>\n            emergence in wildlife. To address this issue, the ibex isolates were characterized using a combination of approaches that included antigenic profiles, molecular typing, optical mapping, and whole-genome sequencing. Genome analyses showed the presence of a new, large prophage containing 35 coding sequences (CDS) that was detected in most but not all ibex strains and has a homolog in\n            <jats:named-content content-type=\"genus-species\">Mycoplasma conjunctivae<\/jats:named-content>\n            , a species causing keratoconjunctivitis in wild ungulates. This and the presence in all strains of large integrated conjugative elements suggested highly dynamic genomes. Nevertheless,\n            <jats:named-content content-type=\"genus-species\">M. agalactiae<\/jats:named-content>\n            strains circulating in the ibex population were shown to be highly related, most likely originating from a single parental clone that has also spread to another wild ungulate species of the same geographical area, the chamois. These strains clearly differ from strains described in Europe so far, including those found nearby, before CA eradication a few years ago. While\n            <jats:named-content content-type=\"genus-species\">M. agalactiae<\/jats:named-content>\n            pathogenicity in ibexes remains unclear, our data showed the emergence of atypical strains in Alpine wild ungulates, raising the question of a role for the wild fauna as a potential reservoir of pathogenic mycoplasmas.\n          <\/jats:p>","DOI":"10.1128\/aem.00332-12","type":"journal-article","created":{"date-parts":[[2012,4,21]],"date-time":"2012-04-21T02:55:58Z","timestamp":1334976958000},"page":"4659-4668","update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":41,"title":["Emergence of Atypical Mycoplasma agalactiae Strains Harboring a New Prophage and Associated with an Alpine Wild Ungulate Mortality Episode"],"prefix":"10.1128","volume":"78","author":[{"given":"Florence","family":"Tardy","sequence":"first","affiliation":[{"name":"Anses, Laboratoire de Lyon, UMR Mycoplasmoses des Ruminants, Lyon, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eric","family":"Baranowski","sequence":"additional","affiliation":[{"name":"INRA, UMR 1225, Ecole Nationale V\u00e9t\u00e9rinaire de Toulouse, Toulouse, France"},{"name":"Universit\u00e9 de Toulouse, INP-ENVT, UMR 1225, Ecole Nationale V\u00e9t\u00e9rinaire de Toulouse, Toulouse, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Laurent-Xavier","family":"Nouvel","sequence":"additional","affiliation":[{"name":"Universit\u00e9 de Toulouse, INP-ENVT, UMR 1225, Ecole Nationale V\u00e9t\u00e9rinaire de Toulouse, Toulouse, France"},{"name":"CIRAD, UMR CMAEE, Campus de Baillarguet, Montpellier, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Virginie","family":"Mick","sequence":"additional","affiliation":[{"name":"Anses, Laboratoire de Lyon, UMR Mycoplasmoses des Ruminants, Lyon, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Luc\u00eda","family":"Manso-Silv\u00e0n","sequence":"additional","affiliation":[{"name":"CIRAD, UMR CMAEE, Campus de Baillarguet, Montpellier, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fran\u00e7ois","family":"Thiaucourt","sequence":"additional","affiliation":[{"name":"CIRAD, UMR CMAEE, Campus de Baillarguet, Montpellier, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Patricia","family":"Th\u00e9bault","sequence":"additional","affiliation":[{"name":"Universit\u00e9 Bordeaux, Centre de Bioinformatique et G\u00e9nomique Fonctionnelle Bordeaux, Bordeaux, France"},{"name":"Universit\u00e9 Bordeaux, Laboratoire Bordelais de Recherche en Informatique, UMR 5800, Talence, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marc","family":"Breton","sequence":"additional","affiliation":[{"name":"Universit\u00e9 Bordeaux, UMR 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France"},{"name":"INRA, UMR 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pascal","family":"Sirand-Pugnet","sequence":"additional","affiliation":[{"name":"Universit\u00e9 Bordeaux, UMR 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France"},{"name":"INRA, UMR 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alain","family":"Blanchard","sequence":"additional","affiliation":[{"name":"Universit\u00e9 Bordeaux, UMR 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France"},{"name":"INRA, UMR 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alexandre","family":"Garnier","sequence":"additional","affiliation":[{"name":"Parc National de la Vanoise, Chamb\u00e9ry, 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