{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,30]],"date-time":"2026-09-30T14:28:20Z","timestamp":1790778500864,"version":"4.1.0"},"reference-count":120,"publisher":"American Society for Microbiology","issue":"17","license":[{"start":{"date-parts":[[2017,8,17]],"date-time":"2017-08-17T00:00:00Z","timestamp":1502928000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2017,9,1]],"date-time":"2017-09-01T00:00:00Z","timestamp":1504224000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["DGE-1144153"],"award-info":[{"award-number":["DGE-1144153"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100004854","name":"New York State Department of Agriculture and Markets","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100004854","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["Appl Environ Microbiol"],"published-print":{"date-parts":[[2017,9]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n          <jats:p>\n            The\n            <jats:named-content content-type=\"genus-species\">Bacillus cereus<\/jats:named-content>\n            group comprises nine species, several of which are pathogenic. Differentiating between isolates that may cause disease and those that do not is a matter of public health and economic importance, but it can be particularly challenging due to the high genomic similarity within the group. To this end, we have developed BTyper, a computational tool that employs a combination of (i) virulence gene-based typing, (ii) multilocus sequence typing (MLST), (iii)\n            <jats:italic>panC<\/jats:italic>\n            clade typing, and (iv)\n            <jats:italic>rpoB<\/jats:italic>\n            allelic typing to rapidly classify\n            <jats:named-content content-type=\"genus-species\">B. cereus<\/jats:named-content>\n            group isolates using nucleotide sequencing data. BTyper was applied to a set of 662\n            <jats:named-content content-type=\"genus-species\">B. cereus<\/jats:named-content>\n            group genome assemblies to (i) identify anthrax-associated genes in non-\n            <jats:named-content content-type=\"genus-species\">B. anthracis<\/jats:named-content>\n            members of the\n            <jats:named-content content-type=\"genus-species\">B. cereus<\/jats:named-content>\n            group, and (ii) identify assemblies from\n            <jats:named-content content-type=\"genus-species\">B. cereus<\/jats:named-content>\n            group strains with emetic potential. With BTyper, the anthrax toxin genes\n            <jats:italic>cya<\/jats:italic>\n            ,\n            <jats:italic>lef<\/jats:italic>\n            , and\n            <jats:italic>pagA<\/jats:italic>\n            were detected in 8 genomes classified by the NCBI as\n            <jats:named-content content-type=\"genus-species\">B. cereus<\/jats:named-content>\n            that clustered into two distinct groups using\n            <jats:italic>k<\/jats:italic>\n            -medoids clustering, while either the\n            <jats:named-content content-type=\"genus-species\">B. anthracis<\/jats:named-content>\n            poly-\u03b3-\n            <jats:sc>d<\/jats:sc>\n            -glutamate capsule biosynthesis genes\n            <jats:italic>capABCDE<\/jats:italic>\n            or the hyaluronic acid capsule\n            <jats:italic>hasA<\/jats:italic>\n            gene was detected in an additional 16 assemblies classified as either\n            <jats:named-content content-type=\"genus-species\">B. cereus<\/jats:named-content>\n            or\n            <jats:named-content content-type=\"genus-species\">Bacillus thuringiensis<\/jats:named-content>\n            isolated from clinical, environmental, and food sources. The emetic toxin genes\n            <jats:italic>cesABCD<\/jats:italic>\n            were detected in 24 assemblies belonging to\n            <jats:italic>panC<\/jats:italic>\n            clades III and VI that had been isolated from food, clinical, and environmental settings. The command line version of BTyper is available at\n            <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"https:\/\/github.com\/lmc297\/BTyper\">https:\/\/github.com\/lmc297\/BTyper<\/jats:ext-link>\n            . In addition, BMiner, a companion application for analyzing multiple BTyper output files in aggregate, can be found at\n            <jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"https:\/\/github.com\/lmc297\/BMiner\">https:\/\/github.com\/lmc297\/BMiner<\/jats:ext-link>\n            .\n          <\/jats:p>\n          <jats:p>\n            <jats:bold>IMPORTANCE<\/jats:bold>\n            <jats:named-content content-type=\"genus-species\">Bacillus cereus<\/jats:named-content>\n            is a foodborne pathogen that is estimated to cause tens of thousands of illnesses each year in the United States alone. Even with molecular methods, it can be difficult to distinguish nonpathogenic\n            <jats:named-content content-type=\"genus-species\">B. cereus<\/jats:named-content>\n            group isolates from their pathogenic counterparts, including the human pathogen\n            <jats:named-content content-type=\"genus-species\">Bacillus anthracis<\/jats:named-content>\n            , which is responsible for anthrax, as well as the insect pathogen\n            <jats:named-content content-type=\"genus-species\">B. thuringiensis<\/jats:named-content>\n            . By using the variety of typing schemes employed by BTyper, users can rapidly classify, characterize, and assess the virulence potential of any isolate using its nucleotide sequencing data.\n          <\/jats:p>","DOI":"10.1128\/aem.01096-17","type":"journal-article","created":{"date-parts":[[2017,6,17]],"date-time":"2017-06-17T00:30:26Z","timestamp":1497659426000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":76,"title":["Rapid, High-Throughput Identification of Anthrax-Causing and Emetic Bacillus cereus Group Genome Assemblies via BTyper, a Computational Tool for Virulence-Based Classification of Bacillus cereus Group Isolates by Using Nucleotide Sequencing Data"],"prefix":"10.1128","volume":"83","author":[{"given":"Laura M.","family":"Carroll","sequence":"first","affiliation":[{"name":"Department of Food Science, Cornell University, Ithaca, New York, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jasna","family":"Kovac","sequence":"additional","affiliation":[{"name":"Department of Food Science, Cornell University, Ithaca, New York, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rachel A.","family":"Miller","sequence":"additional","affiliation":[{"name":"Department of Food Science, Cornell University, Ithaca, New York, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Martin","family":"Wiedmann","sequence":"additional","affiliation":[{"name":"Department of Food Science, Cornell University, Ithaca, New York, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_3_2_2","doi-asserted-by":"publisher","DOI":"10.1099\/00222615-20-1-75"},{"key":"e_1_3_3_3_2","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.030627-0"},{"key":"e_1_3_3_4_2","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-48-4-1373"},{"key":"e_1_3_3_5_2","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-48-3-1031"},{"key":"e_1_3_3_6_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.syapm.2013.04.008"},{"key":"e_1_3_3_7_2","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.001421"},{"key":"e_1_3_3_8_2","unstructured":"Centers for Disease Control and Prevention. Anthrax. Centers for Disease Control and Prevention Atlanta GA. https:\/\/www.cdc.gov\/anthrax\/\n."},{"key":"e_1_3_3_9_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6976.2008.00112.x"},{"key":"e_1_3_3_10_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijfoodmicro.2013.07.004"},{"key":"e_1_3_3_11_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2017.00135"},{"key":"e_1_3_3_12_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.06536-11"},{"key":"e_1_3_3_13_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.femsre.2004.12.001"},{"key":"e_1_3_3_14_2","doi-asserted-by":"publisher","DOI":"10.1128\/genomeA.01080-13"},{"key":"e_1_3_3_15_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2016.00718"},{"key":"e_1_3_3_16_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00253-017-8175-y"},{"key":"e_1_3_3_17_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jenvman.2015.04.026"},{"key":"e_1_3_3_18_2","doi-asserted-by":"publisher","DOI":"10.1007\/s11356-013-2206-8"},{"key":"e_1_3_3_19_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.plaphy.2015.03.004"},{"key":"e_1_3_3_20_2","doi-asserted-by":"publisher","DOI":"10.1111\/1574-6968.12486"},{"key":"e_1_3_3_21_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6968.2009.01749.x"},{"key":"e_1_3_3_22_2","first-page":"427","article-title":"Parasporin, a new anticancer protein group from Bacillus thuringiensis","volume":"29","author":"Ohba M","year":"2009","unstructured":"Ohba M MizukiE UemoriA. 2009. Parasporin, a new anticancer protein group from Bacillus thuringiensis. Anticancer Res29:427\u2013433.","journal-title":"Anticancer Res"},{"key":"e_1_3_3_23_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00284-015-0934-3"},{"key":"e_1_3_3_24_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.70.4.2161-2171.2004"},{"key":"e_1_3_3_25_2","doi-asserted-by":"publisher","DOI":"10.1002\/mnfr.201300065"},{"key":"e_1_3_3_26_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.femsle.2005.06.054"},{"key":"e_1_3_3_27_2","doi-asserted-by":"publisher","DOI":"10.2903\/j.efsa.2016.4524"},{"key":"e_1_3_3_28_2","doi-asserted-by":"publisher","DOI":"10.5740\/jaoacint.11-251"},{"key":"e_1_3_3_29_2","doi-asserted-by":"publisher","DOI":"10.1038\/srep14082"},{"key":"e_1_3_3_30_2","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-42-1-166"},{"key":"e_1_3_3_31_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-016-2883-z"},{"key":"e_1_3_3_32_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00248-006-9122-0"},{"key":"e_1_3_3_33_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.65.12.5436-5442.1999"},{"key":"e_1_3_3_34_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2013.00032"},{"key":"e_1_3_3_35_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.fm.2014.08.013"},{"key":"e_1_3_3_36_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.72.9.5253-5261.2004"},{"key":"e_1_3_3_37_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.41.7.2908-2914.2003"},{"key":"e_1_3_3_38_2","doi-asserted-by":"publisher","DOI":"10.3168\/jds.2016-11660"},{"key":"e_1_3_3_39_2","doi-asserted-by":"publisher","DOI":"10.3168\/jds.2015-9943"},{"key":"e_1_3_3_40_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1462-2920.2007.01495.x"},{"key":"e_1_3_3_41_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.00921-10"},{"key":"e_1_3_3_42_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0156796"},{"key":"e_1_3_3_43_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijfoodmicro.2016.05.011"},{"key":"e_1_3_3_44_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.72.2.1569-1578.2006"},{"key":"e_1_3_3_45_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.fm.2016.09.007"},{"key":"e_1_3_3_46_2","doi-asserted-by":"publisher","DOI":"10.1093\/femsle\/fnw237"},{"key":"e_1_3_3_47_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0080175"},{"key":"e_1_3_3_48_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.fm.2010.06.014"},{"key":"e_1_3_3_49_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2180-8-191"},{"key":"e_1_3_3_50_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01495-07"},{"key":"e_1_3_3_51_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12862-015-0529-4"},{"key":"e_1_3_3_52_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0010986"},{"key":"e_1_3_3_53_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.134437.111"},{"key":"e_1_3_3_54_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1758-2229.2009.00028.x"},{"key":"e_1_3_3_55_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13073-014-0090-6"},{"key":"e_1_3_3_56_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.70.1.191-201.2004"},{"key":"e_1_3_3_57_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2958.1995.tb02340.x"},{"key":"e_1_3_3_58_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.187.22.7765-7772.2005"},{"key":"e_1_3_3_59_2","unstructured":"NCBI. 2003. BioProject PRJNA299\n. Bacillus anthracis strain A2012 Endospore-forming bacteria that causes anthrax. https:\/\/www.ncbi.nlm.nih.gov\/bioproject?LinkName=biosample_bioproject&from_uid=2435829\n."},{"key":"e_1_3_3_60_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.01410-12"},{"key":"e_1_3_3_61_2","doi-asserted-by":"publisher","DOI":"10.3201\/eid1808.111343"},{"key":"e_1_3_3_62_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0089112"},{"key":"e_1_3_3_63_2","doi-asserted-by":"publisher","DOI":"10.1128\/genomeA.01313-15"},{"key":"e_1_3_3_64_2","unstructured":"NCBI. 2016. BioSample SAMN06270273\n. Vaccine-associated Bacillus anthracis . https:\/\/www.ncbi.nlm.nih.gov\/biosample\/SAMN06270273\/\n."},{"key":"e_1_3_3_65_2","doi-asserted-by":"publisher","DOI":"10.1128\/genomeA.00853-14"},{"key":"e_1_3_3_66_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0402414101"},{"key":"e_1_3_3_67_2","doi-asserted-by":"publisher","DOI":"10.1128\/genomeA.00469-14"},{"key":"e_1_3_3_68_2","doi-asserted-by":"publisher","DOI":"10.1128\/genomeA.01446-14"},{"key":"e_1_3_3_69_2","doi-asserted-by":"publisher","DOI":"10.1128\/genomeA.00181-17"},{"key":"e_1_3_3_70_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.fmrre.2004.12.005"},{"key":"e_1_3_3_71_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0083860"},{"key":"e_1_3_3_72_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6968.2008.01231.x"},{"key":"e_1_3_3_73_2","unstructured":"NCBI. 2010. BioProject 57909\n. Bacillus anthracis strain Ames. https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/57909\n."},{"key":"e_1_3_3_74_2","unstructured":"NCBI. 2008. BioProject 17715\n. Bacillus cereus AH187 associated with an emetic outbreak in 1972. https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/17715\n."},{"key":"e_1_3_3_75_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.01015-12"},{"key":"e_1_3_3_76_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00170-06"},{"key":"e_1_3_3_77_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.00323-15"},{"key":"e_1_3_3_78_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.02412-14"},{"key":"e_1_3_3_79_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.03617-13"},{"key":"e_1_3_3_80_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0157718"},{"key":"e_1_3_3_81_2","doi-asserted-by":"publisher","DOI":"10.1111\/1574-6968.12423"},{"key":"e_1_3_3_82_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2958.2011.07582.x"},{"key":"e_1_3_3_83_2","doi-asserted-by":"publisher","DOI":"10.1101\/119420"},{"key":"e_1_3_3_84_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-10-421"},{"key":"e_1_3_3_85_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt1244"},{"key":"e_1_3_3_86_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp163"},{"key":"e_1_3_3_87_2","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2012.0021"},{"key":"e_1_3_3_88_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr854"},{"key":"e_1_3_3_89_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkq1019"},{"key":"e_1_3_3_90_2","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.000161"},{"key":"e_1_3_3_91_2","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2672.2002.01606.x"},{"key":"e_1_3_3_92_2","doi-asserted-by":"publisher","DOI":"10.4315\/0362-028X.JFP-12-276"},{"key":"e_1_3_3_93_2","volume-title":"R: a language and environment for statistical computing","author":"R Core Team","year":"2016","unstructured":"R Core Team 2016. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https:\/\/www.r-project.org\/."},{"key":"e_1_3_3_94_2","volume-title":"shiny: Web application framework for R. R package version 1.0.1","author":"Chang W","year":"2017","unstructured":"Chang W ChengJ AllaireJJ XieY McPhersonJ. 2017. shiny: Web application framework for R. R package version 1.0.1. R Core Development Team, Vienna, Austria. https:\/\/cran.r-project.org\/package=shiny."},{"key":"e_1_3_3_95_2","doi-asserted-by":"publisher","DOI":"10.1007\/978-0-387-98141-3"},{"key":"e_1_3_3_96_2","volume-title":"readr: read rectangular text data","author":"Wickham H","year":"2017","unstructured":"Wickham H HesterJ FrancoisR. 2017. readr: read rectangular text data. R Core Development Team, Vienna, Austria. https:\/\/cran.r-project.org\/package=readr."},{"key":"e_1_3_3_97_2","volume-title":"stringr: simple, consistent wrappers for common string operations","author":"Wickham H","year":"2017","unstructured":"Wickham H . 2017. stringr: simple, consistent wrappers for common string operations. R Core Development Team, Vienna, Austria. https:\/\/cran.r-project.org\/package=stringr."},{"key":"e_1_3_3_98_2","volume-title":"vegan: community ecology package","author":"Oksanen J","year":"2017","unstructured":"Oksanen J BlanchetFG FriendlyM KindtR LegendreP McGlinnD MinchinPR O'HaraRB SimpsonGL SolymosP HenryM StevensH SzoecsE WagnerH. 2017. vegan: community ecology package. R Core Development Team, Vienna, Austria. https:\/\/cran.r-project.org\/package=vegan ."},{"key":"e_1_3_3_99_2","doi-asserted-by":"publisher","DOI":"10.18637\/jss.v040.i01"},{"key":"e_1_3_3_100_2","volume-title":"dplyr: a grammar of data manipulation","author":"Wickham H","year":"2016","unstructured":"Wickham H FrancoisR. 2016. dplyr: a grammar of data manipulation. R Core Development Team, Vienna, Austria. https:\/\/cran.r-project.org\/package=dplyr."},{"key":"e_1_3_3_101_2","volume-title":"cluster: \u201cfinding groups in data\u201d: cluster analysis basics and extensions","author":"Maechler M","year":"2017","unstructured":"Maechler M RousseeuwP StruyfA HubertM HornikK StuderM RoudierP GonzalezJ. 2017. cluster: \u201cfinding groups in data\u201d: cluster analysis basics and extensions. R Core Development Team, Vienna, Austria. https:\/\/cran.r-project.org\/web\/packages\/cluster\/index.html."},{"key":"e_1_3_3_102_2","volume-title":"ggrepel: repulsive text and label geoms for \u2018ggplot2,\u2019 v0.6.5","author":"Slowikowski K","year":"2016","unstructured":"Slowikowski K IrissonJ-O. 2016. ggrepel: repulsive text and label geoms for \u2018ggplot2,\u2019 v0.6.5. R Core Development Team, Vienna, Austria. https:\/\/cran.r-project.org\/package=ggrepel."},{"key":"e_1_3_3_103_2","volume-title":"magrittr: a forward-pipe operator for R","author":"Bache SM","year":"2014","unstructured":"Bache SM WickhamH. 2014. magrittr: a forward-pipe operator for R. R Core Development Team, Vienna, Austria. https:\/\/cran.r-project.org\/package=magrittr."},{"key":"e_1_3_3_104_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr1163"},{"key":"e_1_3_3_105_2","unstructured":"NCBI. 2009. BioProject 31307\n. Bacillus cereus 03BB102 clinical isolate. https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/31307\n."},{"key":"e_1_3_3_106_2","unstructured":"NCBI. 2015. BioProject 290051\n. Draft genome sequences of Bacillus species from the rhizosphere of the desert plant Rhazya stricta . https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/290051\n."},{"key":"e_1_3_3_107_2","unstructured":"NCBI. 2007. BioProject 19959\n. Bacillus cereus 03BB108 isolated from the same area as a pathogenic B. cereus strain. https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/19959\n."},{"key":"e_1_3_3_108_2","doi-asserted-by":"publisher","DOI":"10.1128\/genomeA.00380-13"},{"key":"e_1_3_3_109_2","unstructured":"NCBI. 2009. BioProject 29709\n. Bacillus thuringiensis serovar Monterrey BGSC 4AJ1 produces polyglutamate capsule. https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/29709\n."},{"key":"e_1_3_3_110_2","unstructured":"NCBI. 2016. BioSample SAMN04628222\n. Microbe sample from Bacillus thuringiensis serovar alesti strain BGSC 4C1. https:\/\/www.ncbi.nlm.nih.gov\/biosample\/SAMN04628222\/\n."},{"key":"e_1_3_3_111_2","unstructured":"NCBI. 2017. BioSample SAMN06242081\n. Pathogen: environmental\/food\/other sample for Bacillus cereus . https:\/\/www.ncbi.nlm.nih.gov\/biosample\/SAMN06242081\n."},{"key":"e_1_3_3_112_2","unstructured":"NCBI. 2014. BioSample SAMN03025783\n. Microbe sample Bacillus thuringiensis Et10\/1. https:\/\/www.ncbi.nlm.nih.gov\/biosample\/SAMN03025783\n."},{"key":"e_1_3_3_113_2","unstructured":"NCBI. 2009. BioProject 29689\n. Bacillus cereus F65185 encapsulated wound isolate. https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/29689\n."},{"key":"e_1_3_3_114_2","unstructured":"NCBI. 2015. BioSample SAMN04000100\n. Microbe sample from Bacillus thuringiensis . https:\/\/www.ncbi.nlm.nih.gov\/biosample\/SAMN04000100\n."},{"key":"e_1_3_3_115_2","unstructured":"NCBI. 2016. BioSample SAMN05608051\n. Pathogen: environmental\/food\/other sample from Bacillus cereus . https:\/\/www.ncbi.nlm.nih.gov\/biosample\/SAMN05608051\n."},{"key":"e_1_3_3_116_2","volume-title":"Full information on strain B. cereus H3081.97","author":"University of Oslo","year":"2013","unstructured":"University of Oslo. 2013. Full information on strain B. cereus H3081.97. University of Oslo, Oslo, Norway. http:\/\/mlstoslo.uio.no\/cgi-bin\/mlstdb\/mlstdbnet5.pl?dbase=superdb&page=superstraininfo&file=bcereusgrp_isolates.xml&strain=%27H3081.97%27 ."},{"key":"e_1_3_3_117_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.02519-10"},{"key":"e_1_3_3_118_2","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2672.2003.01790.x"},{"key":"e_1_3_3_119_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.02478-06"},{"key":"e_1_3_3_120_2","doi-asserted-by":"publisher","DOI":"10.1128\/genomeA.00435-16"},{"key":"e_1_3_3_121_2","doi-asserted-by":"publisher","DOI":"10.1007\/s10482-005-9025-y"}],"container-title":["Applied and Environmental Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/AEM.01096-17","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/AEM.01096-17","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,2,23]],"date-time":"2022-02-23T18:33:38Z","timestamp":1645641218000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/AEM.01096-17"}},"subtitle":[],"editor":[{"given":"Donald W.","family":"Schaffner","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2017,9]]},"references-count":120,"journal-issue":{"issue":"17","published-print":{"date-parts":[[2017,9]]}},"alternative-id":["10.1128\/AEM.01096-17"],"URL":"https:\/\/doi.org\/10.1128\/aem.01096-17","relation":{},"ISSN":["0099-2240","1098-5336"],"issn-type":[{"value":"0099-2240","type":"print"},{"value":"1098-5336","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,9]]},"assertion":[{"value":"2017-05-15","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2017-06-06","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2017-08-17","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e01096-17"}}