{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,26]],"date-time":"2026-09-26T05:47:53Z","timestamp":1790401673900,"version":"4.1.0"},"reference-count":89,"publisher":"American Society for Microbiology","issue":"24","license":[{"start":{"date-parts":[[2021,11,24]],"date-time":"2021-11-24T00:00:00Z","timestamp":1637712000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/doi.org\/10.1128\/ASMCopyrightv2"},{"start":{"date-parts":[[2021,11,24]],"date-time":"2021-11-24T00:00:00Z","timestamp":1637712000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"funder":[{"name":"INTERBEV","award":["Protocol N\u00b0 SECU-15-31"],"award-info":[{"award-number":["Protocol N\u00b0 SECU-15-31"]}]},{"name":"Horizon 2020","award":["No. 773830"],"award-info":[{"award-number":["No. 773830"]}]},{"DOI":"10.13039\/501100002915","name":"Fondation pour la Recherche M\u00e9dicale","doi-asserted-by":"publisher","award":["DEQ20161136698"],"award-info":[{"award-number":["DEQ20161136698"]}],"id":[{"id":"10.13039\/501100002915","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002915","name":"Fondation pour la Recherche M\u00e9dicale","doi-asserted-by":"publisher","award":["FDM20150633309"],"award-info":[{"award-number":["FDM20150633309"]}],"id":[{"id":"10.13039\/501100002915","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["Appl Environ Microbiol"],"published-print":{"date-parts":[[2021,11,24]]},"abstract":"<jats:p>The gut microbiota is the epicenter of the emergence of resistance. Considerable amount of knowledge on the molecular mechanisms of resistance has been accumulated, but the ecological and evolutionary forces at play in nature are less studied.<\/jats:p>","DOI":"10.1128\/aem.01358-21","type":"journal-article","created":{"date-parts":[[2021,10,6]],"date-time":"2021-10-06T14:21:11Z","timestamp":1633530071000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":14,"title":["Interplay between Bacterial Clones and Plasmids in the Spread of Antibiotic Resistance Genes in the Gut: Lessons from a Temporal Study in Veal Calves"],"prefix":"10.1128","volume":"87","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6611-214X","authenticated-orcid":true,"given":"M\u00e9ril","family":"Massot","sequence":"first","affiliation":[{"name":"Universit\u00e9 de Paris, IAME, UMR 1137, INSERM, Paris, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pierre","family":"Ch\u00e2tre","sequence":"additional","affiliation":[{"name":"Unit\u00e9 Antibior\u00e9sistance et Virulence Bact\u00e9riennes, ANSES Laboratoire de Lyon, Universit\u00e9 de Lyon, Lyon, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"B\u00e9n\u00e9dicte","family":"Condamine","sequence":"additional","affiliation":[{"name":"Universit\u00e9 de Paris, IAME, UMR 1137, INSERM, Paris, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"V\u00e9ronique","family":"M\u00e9tayer","sequence":"additional","affiliation":[{"name":"Unit\u00e9 Antibior\u00e9sistance et Virulence Bact\u00e9riennes, ANSES Laboratoire de Lyon, Universit\u00e9 de Lyon, Lyon, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Olivier","family":"Clermont","sequence":"additional","affiliation":[{"name":"Universit\u00e9 de Paris, IAME, UMR 1137, INSERM, Paris, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jean-Yves","family":"Madec","sequence":"additional","affiliation":[{"name":"Unit\u00e9 Antibior\u00e9sistance et Virulence Bact\u00e9riennes, ANSES Laboratoire de Lyon, Universit\u00e9 de Lyon, Lyon, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7860-1717","authenticated-orcid":true,"given":"Erick","family":"Denamur","sequence":"additional","affiliation":[{"name":"Universit\u00e9 de Paris, IAME, UMR 1137, INSERM, Paris, France"},{"name":"Universit\u00e9 Sorbonne Paris Nord, IAME, Paris, France"},{"name":"AP-HP, Laboratoire de G\u00e9n\u00e9tique Mol\u00e9culaire, H\u00f4pital Bichat-Claude Bernard, Paris, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1333-5603","authenticated-orcid":true,"given":"Marisa","family":"Haenni","sequence":"additional","affiliation":[{"name":"Unit\u00e9 Antibior\u00e9sistance et Virulence Bact\u00e9riennes, ANSES Laboratoire de Lyon, Universit\u00e9 de Lyon, Lyon, France"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_3_2_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1469-0691.2007.01851.x"},{"key":"e_1_3_3_3_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijantimicag.2006.08.016"},{"key":"e_1_3_3_4_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.02299-07"},{"key":"e_1_3_3_5_2","doi-asserted-by":"publisher","DOI":"10.1186\/1746-6148-8-21"},{"key":"e_1_3_3_6_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0065681"},{"key":"e_1_3_3_7_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.vetmic.2014.02.023"},{"key":"e_1_3_3_8_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2019.00076"},{"key":"e_1_3_3_9_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkz035"},{"key":"e_1_3_3_10_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2019.00792"},{"key":"e_1_3_3_11_2","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(16)00007-4"},{"key":"e_1_3_3_12_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01147-16"},{"key":"e_1_3_3_13_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkt219"},{"key":"e_1_3_3_14_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.prevetmed.2017.05.018"},{"key":"e_1_3_3_15_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkr570"},{"key":"e_1_3_3_16_2","doi-asserted-by":"publisher","DOI":"10.1186\/2047-2994-1-39"},{"key":"e_1_3_3_17_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-019-0503-9"},{"key":"e_1_3_3_18_2","doi-asserted-by":"publisher","DOI":"10.1186\/s42523-020-00052-6"},{"key":"e_1_3_3_19_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01423-13"},{"key":"e_1_3_3_20_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.02647-10"},{"key":"e_1_3_3_21_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.01468-12"},{"key":"e_1_3_3_22_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.50.2.791-795.2006"},{"key":"e_1_3_3_23_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13073-014-0090-6"},{"key":"e_1_3_3_24_2","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000192"},{"key":"e_1_3_3_25_2","doi-asserted-by":"publisher","DOI":"10.1111\/1462-2920.14713"},{"key":"e_1_3_3_26_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-014-0524-x"},{"key":"e_1_3_3_27_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkh340"},{"key":"e_1_3_3_28_2","doi-asserted-by":"publisher","DOI":"10.1534\/genetics.105.048975"},{"key":"e_1_3_3_29_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0009490"},{"key":"e_1_3_3_30_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq033"},{"key":"e_1_3_3_31_2","unstructured":"Seemann T. 2019. Abricate. GitHub https:\/\/github.com\/tseemann\/abricate."},{"key":"e_1_3_3_32_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dks261"},{"key":"e_1_3_3_33_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.02412-14"},{"key":"e_1_3_3_34_2","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000211"},{"key":"e_1_3_3_35_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp324"},{"key":"e_1_3_3_36_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr330"},{"key":"e_1_3_3_37_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp352"},{"key":"e_1_3_3_38_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkj406"},{"key":"e_1_3_3_39_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkv1189"},{"key":"e_1_3_3_40_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-9-75"},{"key":"e_1_3_3_41_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt1226"},{"key":"e_1_3_3_42_2","doi-asserted-by":"publisher","DOI":"10.1038\/srep08365"},{"key":"e_1_3_3_43_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr509"},{"key":"e_1_3_3_44_2","doi-asserted-by":"publisher","DOI":"10.1128\/mr.51.4.381-395.1987"},{"key":"e_1_3_3_45_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.mimet.2005.03.018"},{"key":"e_1_3_3_46_2","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4939-9877-7_20"},{"key":"e_1_3_3_47_2","volume-title":"R: A language and environment for statistical computing.","author":"R Core Team","year":"2019","unstructured":"R Core Team. 2019. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria."},{"key":"e_1_3_3_48_2","unstructured":"Wheeler B Torchiano M. 2016. lmPerm: Permutation Tests for Linear Models."},{"key":"e_1_3_3_49_2","unstructured":"Wickham H Chang W Henry L Pedersen TL Takahashi K Wilke C Woo K Yutani H Dunnington D. 2020. ggplot2: create elegant data visualisations using the grammar of graphics. https:\/\/ggplot2.tidyverse.org\/reference\/ggplot2-package.html"},{"key":"e_1_3_3_50_2","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msv280"},{"key":"e_1_3_3_51_2","doi-asserted-by":"publisher","DOI":"10.3201\/eid2209.160304"},{"key":"e_1_3_3_52_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.01333-08"},{"key":"e_1_3_3_53_2","doi-asserted-by":"publisher","DOI":"10.1017\/S0950268813002665"},{"key":"e_1_3_3_54_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.prevetmed.2017.10.013"},{"key":"e_1_3_3_55_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0146488"},{"key":"e_1_3_3_56_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1462-2920.2009.02110.x"},{"key":"e_1_3_3_57_2","doi-asserted-by":"publisher","DOI":"10.1038\/335351a0"},{"key":"e_1_3_3_58_2","doi-asserted-by":"publisher","DOI":"10.1139\/w98-020"},{"key":"e_1_3_3_59_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.73.12.8039-8049.2005"},{"key":"e_1_3_3_60_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.01199-10"},{"key":"e_1_3_3_61_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00864-16"},{"key":"e_1_3_3_62_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01293-16"},{"key":"e_1_3_3_63_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dki255"},{"key":"e_1_3_3_64_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dky037"},{"key":"e_1_3_3_65_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.1137550"},{"key":"e_1_3_3_66_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.1128794"},{"key":"e_1_3_3_67_2","doi-asserted-by":"publisher","DOI":"10.1016\/S2666-5247(20)30224-X"},{"key":"e_1_3_3_68_2","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/civ333"},{"key":"e_1_3_3_69_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6941.2009.00671.x"},{"key":"e_1_3_3_70_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2010.120"},{"key":"e_1_3_3_71_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0054783"},{"key":"e_1_3_3_72_2","doi-asserted-by":"publisher","DOI":"10.1002\/mbo3.266"},{"key":"e_1_3_3_73_2","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro2298"},{"key":"e_1_3_3_74_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.03771-15"},{"key":"e_1_3_3_75_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2020.00580"},{"key":"e_1_3_3_76_2","article-title":"Dynamics of extended-spectrum \u03b2-lactamase-producing Enterobacterales colonization in long-term carriers following travel abroad","volume":"7","author":"Armand-Lef\u00e8vre L","year":"2021","unstructured":"Armand-Lef\u00e8vre L, Rondinaud E, Desvillechabrol D, Mullaert J, Clermont O, Petitjean M, Ruppe E, Cokelaer T, Bouchier C, Tenaillon O, Ma L, Nooroya Y, Matheron S, Andremont A, Denamur E, Kennedy SPY, The VOYAG-R Study Group. 2021. Dynamics of extended-spectrum \u03b2-lactamase-producing Enterobacterales colonization in long-term carriers following travel abroad. Microb Genom 7:e000576.","journal-title":"Microb Genom"},{"key":"e_1_3_3_77_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.1082240"},{"key":"e_1_3_3_78_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1462-2920.2012.02852.x"},{"key":"e_1_3_3_79_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2018.00375"},{"key":"e_1_3_3_80_2","doi-asserted-by":"publisher","DOI":"10.1099\/00221287-148-5-1513"},{"key":"e_1_3_3_81_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00698-13"},{"key":"e_1_3_3_82_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2180-12-53"},{"key":"e_1_3_3_83_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkw350"},{"key":"e_1_3_3_84_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01130-19"},{"key":"e_1_3_3_85_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1002181"},{"key":"e_1_3_3_86_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2013.182"},{"key":"e_1_3_3_87_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41396-020-00819-4"},{"key":"e_1_3_3_88_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.vetmic.2021.109049"},{"key":"e_1_3_3_89_2","doi-asserted-by":"publisher","DOI":"10.3201\/eid2312.170450"},{"key":"e_1_3_3_90_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.02831-10"}],"container-title":["Applied and Environmental Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/AEM.01358-21","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/AEM.01358-21","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,2,23]],"date-time":"2022-02-23T16:31:31Z","timestamp":1645633891000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/AEM.01358-21"}},"subtitle":[],"editor":[{"given":"Martha","family":"Vives","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2021,11,24]]},"references-count":89,"journal-issue":{"issue":"24","published-print":{"date-parts":[[2021,11,24]]}},"alternative-id":["10.1128\/AEM.01358-21"],"URL":"https:\/\/doi.org\/10.1128\/aem.01358-21","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/2021.06.19.449090","asserted-by":"object"}]},"ISSN":["0099-2240","1098-5336"],"issn-type":[{"value":"0099-2240","type":"print"},{"value":"1098-5336","type":"electronic"}],"subject":[],"published":{"date-parts":[[2021,11,24]]},"assertion":[{"value":"2021-07-12","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2021-10-01","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2021-11-24","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e01358-21"}}