{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,15]],"date-time":"2026-05-15T17:56:36Z","timestamp":1778867796716,"version":"3.51.4"},"reference-count":80,"publisher":"American Society for Microbiology","issue":"1","license":[{"start":{"date-parts":[[2023,1,31]],"date-time":"2023-01-31T00:00:00Z","timestamp":1675123200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/doi.org\/10.1128\/ASMCopyrightv2"},{"start":{"date-parts":[[2023,1,31]],"date-time":"2023-01-31T00:00:00Z","timestamp":1675123200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["EAR 0311854"],"award-info":[{"award-number":["EAR 0311854"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["EAR 0527046"],"award-info":[{"award-number":["EAR 0527046"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100012627","name":"NASA | NASA Astrobiology Institute","doi-asserted-by":"publisher","award":["NNA04CC06A"],"award-info":[{"award-number":["NNA04CC06A"]}],"id":[{"id":"10.13039\/100012627","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["Appl Environ Microbiol"],"published-print":{"date-parts":[[2023,1,31]]},"abstract":"<jats:p>Microorganisms that are adapted to extremely acidic conditions, known as extreme acidophiles, are catalysts for rock weathering, metal cycling, and mineral formation in naturally acidic environments. They are also important drivers of large-scale industrial processes such as biomining and contaminant remediation.<\/jats:p>","DOI":"10.1128\/aem.01575-22","type":"journal-article","created":{"date-parts":[[2023,1,5]],"date-time":"2023-01-05T09:01:32Z","timestamp":1672909292000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":12,"title":["Convergent Community Assembly among Globally Separated Acidic Cave Biofilms"],"prefix":"10.1128","volume":"89","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4556-0418","authenticated-orcid":false,"given":"Daniel S.","family":"Jones","sequence":"first","affiliation":[{"name":"Earth and Environmental Science, New Mexico Institute of Mining and Technology, Socorro, New Mexico, USA"},{"name":"National Cave and Karst Research Institute, Carlsbad, New Mexico, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Irene","family":"Schaperdoth","sequence":"additional","affiliation":[{"name":"Department of Geosciences, The Pennsylvania State University, University Park, Pennsylvania, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Diana E.","family":"Northup","sequence":"additional","affiliation":[{"name":"Department of Biology, University of New Mexico, Albuquerque, New Mexico, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rodolfo","family":"G\u00f3mez-Cruz","sequence":"additional","affiliation":[{"name":"Biological Sciences Academic Division, Autonomous University Ju\u00e1rez de Tabasco, Villahermosa Centro, Tabasco, Mexico"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5214-0601","authenticated-orcid":false,"given":"Jennifer L.","family":"Macalady","sequence":"additional","affiliation":[{"name":"Department of Geosciences, The Pennsylvania State University, University Park, Pennsylvania, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"235","reference":[{"key":"e_1_3_3_2_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00253-013-4954-2"},{"key":"e_1_3_3_3_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.copbio.2014.04.008"},{"key":"e_1_3_3_4_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0168-6496(03)00028-X"},{"key":"e_1_3_3_5_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1462-2920.2007.01294.x"},{"key":"e_1_3_3_6_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.03029-09"},{"key":"e_1_3_3_7_2","doi-asserted-by":"publisher","DOI":"10.1089\/ast.2017.1650"},{"key":"e_1_3_3_8_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.gca.2011.10.015"},{"key":"e_1_3_3_9_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00015-17"},{"key":"e_1_3_3_10_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2004.09.002"},{"key":"e_1_3_3_11_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.chemosphere.2006.07.091"},{"key":"e_1_3_3_12_2","doi-asserted-by":"publisher","DOI":"10.1021\/es501322d"},{"key":"e_1_3_3_13_2","doi-asserted-by":"publisher","DOI":"10.3390\/min8080343"},{"key":"e_1_3_3_14_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.hydromet.2019.105152"},{"key":"e_1_3_3_15_2","doi-asserted-by":"publisher","DOI":"10.1099\/mic.0.2006\/001206-0"},{"key":"e_1_3_3_16_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.syapm.2007.09.001"},{"key":"e_1_3_3_17_2","doi-asserted-by":"publisher","DOI":"10.1038\/nature02340"},{"key":"e_1_3_3_18_2","doi-asserted-by":"publisher","DOI":"10.2138\/rmg.2005.59.11"},{"key":"e_1_3_3_19_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0003853"},{"key":"e_1_3_3_20_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00274-09"},{"key":"e_1_3_3_21_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2012.139"},{"key":"e_1_3_3_22_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00917-16"},{"key":"e_1_3_3_23_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.02919-14"},{"key":"e_1_3_3_24_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.66.11.4962-4971.2000"},{"key":"e_1_3_3_25_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.65.8.3627-3632.1999"},{"key":"e_1_3_3_26_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.279.5356.1519"},{"key":"e_1_3_3_27_2","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro1341"},{"key":"e_1_3_3_28_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.72.1.212-220.2006"},{"key":"e_1_3_3_29_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41396-019-0387-y"},{"key":"e_1_3_3_30_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1462-2920.2008.01584.x"},{"key":"e_1_3_3_31_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0009-2541(00)00217-5"},{"key":"e_1_3_3_32_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1462-2920.2007.01256.x"},{"key":"e_1_3_3_33_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2011.75"},{"key":"e_1_3_3_34_2","doi-asserted-by":"publisher","DOI":"10.1080\/01490451.2013.834008"},{"key":"e_1_3_3_35_2","doi-asserted-by":"publisher","DOI":"10.1080\/01490450050023809"},{"key":"e_1_3_3_36_2","doi-asserted-by":"publisher","DOI":"10.3390\/genes9010055"},{"key":"e_1_3_3_37_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2016.74"},{"key":"e_1_3_3_38_2","doi-asserted-by":"publisher","DOI":"10.4311\/jcks2008es0056"},{"key":"e_1_3_3_39_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00647-10"},{"key":"e_1_3_3_40_2","first-page":"185","volume-title":"New Mexico Geological Society fall field conference guidebook","author":"Hose LD","year":"2006","unstructured":"Hose LD, Macalady JL, Land L, Lueth V, Raatz B, Boston P, Love D. 2006. Observations from active sulfidic karst systems: is the present the key to understanding Guadalupe Mountain speleogenesis, p 185\u2013194. In Land L, Lueth VW, Raatz W, Boston P, Love DW (ed), New Mexico Geological Society fall field conference guidebook, vol 57. Caves and karst of southeastern New Mexico. New Mexico Geological Society, Socorro, NM."},{"key":"e_1_3_3_41_2","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msv281"},{"key":"e_1_3_3_42_2","doi-asserted-by":"publisher","DOI":"10.1038\/nbt.2579"},{"key":"e_1_3_3_43_2","doi-asserted-by":"publisher","DOI":"10.1099\/ijsem.0.000725"},{"key":"e_1_3_3_44_2","volume-title":"Analysis of ecological communities","author":"McCune B","year":"2002","unstructured":"McCune B, Grace JB. 2002. Analysis of ecological communities, vol 28. MjM Software Design, Gleneden Beach, OR."},{"key":"e_1_3_3_45_2","doi-asserted-by":"publisher","DOI":"10.1099\/00221287-142-4-775"},{"key":"e_1_3_3_46_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-019-51486-1"},{"key":"e_1_3_3_47_2","doi-asserted-by":"publisher","DOI":"10.1128\/MRA.01159-19"},{"key":"e_1_3_3_48_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1007801"},{"key":"e_1_3_3_49_2","doi-asserted-by":"publisher","DOI":"10.1086\/BBLv219n3p268"},{"key":"e_1_3_3_50_2","doi-asserted-by":"publisher","DOI":"10.1186\/1745-6150-4-35"},{"key":"e_1_3_3_51_2","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-53348-3_54"},{"key":"e_1_3_3_52_2","doi-asserted-by":"publisher","DOI":"10.1007\/s10040-014-1135-z"},{"key":"e_1_3_3_53_2","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-53348-3_8"},{"key":"e_1_3_3_54_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.chemgeo.2015.06.002"},{"key":"e_1_3_3_55_2","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-53348-3_10"},{"key":"e_1_3_3_56_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.66.9.3842-3849.2000"},{"key":"e_1_3_3_57_2","doi-asserted-by":"publisher","DOI":"10.1128\/aem.60.4.1232-1240.1994"},{"key":"e_1_3_3_58_2","first-page":"115","volume-title":"Nucleic acid techniques in bacterial systematics.","author":"Lane D","year":"1991","unstructured":"Lane D. 1991. 16S\/23S rRNA sequencing, p 115\u2013175. In Stackebrandt E, Goodfellow M (ed), Nucleic acid techniques in bacterial systematics. Wiley, New York, NY."},{"key":"e_1_3_3_59_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2008.25"},{"key":"e_1_3_3_60_2","volume-title":"Comparison of bacterial and archaeal communities in the subsurface versus surface: implications for nitrogen cycling.","author":"Kimble JC","year":"2018","unstructured":"Kimble JC. 2018. Comparison of bacterial and archaeal communities in the subsurface versus surface: implications for nitrogen cycling. Doctoral dissertation. The University of New Mexico, Albuquerque, NM."},{"key":"e_1_3_3_61_2","doi-asserted-by":"publisher","DOI":"10.1089\/ast.2010.0562"},{"key":"e_1_3_3_62_2","doi-asserted-by":"publisher","DOI":"10.1093\/femsec\/fiy173"},{"key":"e_1_3_3_63_2","first-page":"29","volume-title":"Gene probes: principles and protocols.","author":"Hugenholtz P","year":"2002","unstructured":"Hugenholtz P, Tyson GW, Blackall LL. 2002. Design and evaluation of 16S rRNA-targeted oligonucleotide probes for fluorescence in situ hybridization, p 29\u201342. In de Muro MA, Rapley R (ed), Gene probes: principles and protocols. Humana Press, Totowa, NJ."},{"key":"e_1_3_3_64_2","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(85)90276-1"},{"key":"e_1_3_3_65_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bth226"},{"key":"e_1_3_3_66_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkm864"},{"key":"e_1_3_3_67_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkh293"},{"key":"e_1_3_3_68_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks1219"},{"key":"e_1_3_3_69_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt1209"},{"key":"e_1_3_3_70_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btl446"},{"key":"e_1_3_3_71_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00909-17"},{"key":"e_1_3_3_72_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01541-09"},{"key":"e_1_3_3_73_2","doi-asserted-by":"publisher","DOI":"10.1093\/sysbio\/syr010"},{"key":"e_1_3_3_74_2","volume-title":"R: a language and environment for statistical computing.","author":"R Core Team","year":"2007","unstructured":"R Core Team. 2007. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http:\/\/www.R-project.org."},{"key":"e_1_3_3_75_2","unstructured":"Oksanen J Blanchet FG Friendly M Kindt R Legendre P McGlinn D Minchin PR O\u2019Hara R Simpson GL Solymos P Szoecs E Wagner H. 2017. vegan: Community Ecology Package. R package version 2.4-3. https:\/\/CRAN.R-project.org\/package=vegan."},{"key":"e_1_3_3_76_2","doi-asserted-by":"publisher","DOI":"10.1128\/aem.56.6.1919-1925.1990"},{"key":"e_1_3_3_77_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0723-2020(99)80053-8"},{"key":"e_1_3_3_78_2","first-page":"205","volume-title":"Nucleic acid techniques in bacterial systematics.","author":"Stahl DA","year":"1991","unstructured":"Stahl DA, Amann RI. 1991. Development and application of nucleic acid probes in bacterial systematics, p 205\u2013248. In Stackebrandt E, Goodfellow M (ed), Nucleic acid techniques in bacterial systematics. John Wiley & Sons Ltd, Chichester, UK."},{"key":"e_1_3_3_79_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.69.8.4853-4865.2003"},{"key":"e_1_3_3_80_2","doi-asserted-by":"publisher","DOI":"10.1007\/s002480000063"},{"key":"e_1_3_3_81_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.287.5459.1796"}],"container-title":["Applied and Environmental Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/aem.01575-22","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/aem.01575-22","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,31]],"date-time":"2023-01-31T09:11:25Z","timestamp":1675156285000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/aem.01575-22"}},"subtitle":[],"editor":[{"given":"John R.","family":"Spear","sequence":"additional","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2023,1,31]]},"references-count":80,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2023,1,31]]}},"alternative-id":["10.1128\/aem.01575-22"],"URL":"https:\/\/doi.org\/10.1128\/aem.01575-22","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/2022.09.13.507874","asserted-by":"object"}]},"ISSN":["0099-2240","1098-5336"],"issn-type":[{"value":"0099-2240","type":"print"},{"value":"1098-5336","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,1,31]]},"assertion":[{"value":"2022-09-13","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2022-12-06","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2023-01-05","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e01575-22"}}