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Land use changes, such as peatland forests conversion to oil palm plantations, affect the soil microbiome and greenhouse gas (GHG) emissions. However, the temporal dynamics of microbial community changes and their role as GHG indicators are not well understood. This study examines the dynamics of peat chemistry, soil microbial communities, and GHG emissions from 2016 to 2020 in a logged-over secondary peat swamp forest in Sarawak, Malaysia, which transitioned to an oil palm plantation. This study focuses on changes in genetic composition governing plant litter degradation, methane (CH\n                      <jats:sub>4<\/jats:sub>\n                      ), and nitrous oxide (N\n                      <jats:sub>2<\/jats:sub>\n                      O) fluxes. Soil CO\n                      <jats:sub>2<\/jats:sub>\n                      emission increased (doubling from approximately 200 mg C m\n                      <jats:sup>\u22122<\/jats:sup>\n                      h\n                      <jats:sup>\u22121<\/jats:sup>\n                      ), while CH\n                      <jats:sub>4<\/jats:sub>\n                      emissions decreased (from 200 \u00b5g C m\n                      <jats:sup>\u22122<\/jats:sup>\n                      h\n                      <jats:sup>\u22121<\/jats:sup>\n                      to slightly negative) following land use changes. The N\n                      <jats:sub>2<\/jats:sub>\n                      O emissions in the oil palm plantation reached approximately 1,510 \u00b5g N m\n                      <jats:sup>\u22122<\/jats:sup>\n                      h\n                      <jats:sup>\u22121<\/jats:sup>\n                      , significantly higher than previous land uses. The CH\n                      <jats:sub>4<\/jats:sub>\n                      fluxes were driven by groundwater table, humification levels, and C:N ratio, with\n                      <jats:italic>Methanomicrobia<\/jats:italic>\n                      populations dominating methanogenesis and\n                      <jats:italic>Methylocystis<\/jats:italic>\n                      as the main CH\n                      <jats:sub>4<\/jats:sub>\n                      oxidizer. The N\n                      <jats:sub>2<\/jats:sub>\n                      O fluxes correlated with groundwater table, total nitrogen, and C:N ratio with dominant\n                      <jats:italic>nirK<\/jats:italic>\n                      -type denitrifiers (13-fold\n                      <jats:italic>nir<\/jats:italic>\n                      to\n                      <jats:italic>nosZ<\/jats:italic>\n                      ) and a minor role by nitrification (a threefold increase in\n                      <jats:italic>amoA<\/jats:italic>\n                      ) in the plantation.\n                      <jats:italic>Proteobacteria<\/jats:italic>\n                      and\n                      <jats:italic>Acidobacteria<\/jats:italic>\n                      encoding incomplete denitrification genes potentially impact N\n                      <jats:sub>2<\/jats:sub>\n                      O emissions. These findings highlighted complex interactions between microbial communities and environmental factors influencing GHG fluxes in altered tropical peatland ecosystems.\n                    <\/jats:p>\n                    <jats:sec>\n                      <jats:title>IMPORTANCE<\/jats:title>\n                      <jats:p>Tropical peatlands are carbon-rich environments that release significant amounts of greenhouse gases when drained or disturbed. This study assesses the impact of land use change on a secondary tropical peat swamp forest site converted into an oil palm plantation. The transformation lowered groundwater levels and changed soil properties. Consequently, the oil palm plantation site released higher carbon dioxide and nitrous oxide compared to previous land uses. As microbial communities play crucial roles in carbon and nitrogen cycles, this study identified environmental factors associated with microbial diversity, including genes and specific microbial groups related to nitrous oxide and methane emissions. Understanding the factors driving microbial composition shifts and greenhouse gas emissions in tropical peatlands provides baseline information to potentially mitigate environmental consequences of land use change, leading to a broader impact on climate change mitigation efforts and proper land management practices.<\/jats:p>\n                    <\/jats:sec>\n                  <\/jats:sec>","DOI":"10.1128\/aem.01986-24","type":"journal-article","created":{"date-parts":[[2024,12,23]],"date-time":"2024-12-23T09:02:37Z","timestamp":1734944557000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":11,"title":["Temporal dynamics of soil microbial C and N cycles with GHG fluxes in the transition from tropical peatland forest to oil palm plantation"],"prefix":"10.1128","volume":"91","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3290-4966","authenticated-orcid":true,"given":"Frazer","family":"Midot","sequence":"first","affiliation":[{"name":"Sarawak Tropical Peat Research Institute","place":["Kota Samarahan, Malaysia"]},{"name":"Faculty of Science, Universiti Teknologi Malaysia","place":["Skudai, Malaysia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2839-8722","authenticated-orcid":true,"given":"Kian Mau","family":"Goh","sequence":"additional","affiliation":[{"name":"Faculty of Science, Universiti Teknologi Malaysia","place":["Skudai, Malaysia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kok Jun","family":"Liew","sequence":"additional","affiliation":[{"name":"Faculty of Science, Universiti Teknologi Malaysia","place":["Skudai, Malaysia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sharon Yu Ling","family":"Lau","sequence":"additional","affiliation":[{"name":"Sarawak Tropical Peat Research Institute","place":["Kota Samarahan, Malaysia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mikk","family":"Espenberg","sequence":"additional","affiliation":[{"name":"Institute of Ecology and Earth Sciences, University of Tartu","place":["Tartu, Estonia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"\u00dclo","family":"Mander","sequence":"additional","affiliation":[{"name":"Institute of Ecology and Earth Sciences, University of Tartu","place":["Tartu, Estonia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lulie","family":"Melling","sequence":"additional","affiliation":[{"name":"Sarawak Tropical Peat Research Institute","place":["Kota Samarahan, Malaysia"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_4_2_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.catena.2017.09.010"},{"key":"e_1_3_4_3_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-018-03406-6"},{"key":"e_1_3_4_4_2","doi-asserted-by":"publisher","DOI":"10.3389\/feart.2022.670867"},{"key":"e_1_3_4_5_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41561-022-00966-7"},{"key":"e_1_3_4_6_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.ancene.2022.100324"},{"key":"e_1_3_4_7_2","doi-asserted-by":"publisher","DOI":"10.1111\/gcb.13689"},{"key":"e_1_3_4_8_2","doi-asserted-by":"publisher","DOI":"10.1038\/nature21048"},{"key":"e_1_3_4_9_2","doi-asserted-by":"publisher","DOI":"10.1007\/s11027-016-9712-1"},{"key":"e_1_3_4_10_2","doi-asserted-by":"publisher","DOI":"10.3390\/f11121285"},{"key":"e_1_3_4_11_2","doi-asserted-by":"publisher","DOI":"10.3389\/fenvs.2021.617828"},{"key":"e_1_3_4_12_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.geoderma.2019.02.021"},{"key":"e_1_3_4_13_2","doi-asserted-by":"publisher","DOI":"10.1175\/BAMS-D-18-0268.1"},{"key":"e_1_3_4_14_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2022.159973"},{"key":"e_1_3_4_15_2","doi-asserted-by":"publisher","DOI":"10.5194\/bg-14-3669-2017"},{"key":"e_1_3_4_16_2","doi-asserted-by":"publisher","DOI":"10.1007\/s11273-016-9498-7"},{"key":"e_1_3_4_17_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2018.11.046"},{"key":"e_1_3_4_18_2","doi-asserted-by":"publisher","DOI":"10.1007\/s13157-020-01342-0"},{"key":"e_1_3_4_19_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41597-023-02267-z"},{"key":"e_1_3_4_20_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.quascirev.2014.05.002"},{"key":"e_1_3_4_21_2","doi-asserted-by":"publisher","DOI":"10.1098\/rsta.2020.0457"},{"key":"e_1_3_4_22_2","doi-asserted-by":"publisher","DOI":"10.3390\/atmos12101340"},{"key":"e_1_3_4_23_2","first-page":"2","article-title":"Aspects of microbial communities in peatland carbon cycling under changing climate and land use pressures","volume":"29","author":"Robinson CH","year":"2023","unstructured":"Robinson CH, Ritson JP, Alderson DM, Malik AA, Griffiths RI, Heinemeyer A, Gallego-Sala AV, Quillet A, Robroek BJ, Evans C. 2023. 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