{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,30]],"date-time":"2026-09-30T15:10:31Z","timestamp":1790781031583,"version":"4.1.0"},"reference-count":84,"publisher":"American Society for Microbiology","issue":"4","license":[{"start":{"date-parts":[[2025,4,23]],"date-time":"2025-04-23T00:00:00Z","timestamp":1745366400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2025,4,23]],"date-time":"2025-04-23T00:00:00Z","timestamp":1745366400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"funder":[{"name":"Australian Research Council Centre of Excellence in Synthetic Biology","award":["CE200100029"],"award-info":[{"award-number":["CE200100029"]}]}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["Appl Environ Microbiol"],"published-print":{"date-parts":[[2025,4,23]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n          <jats:sec>\n            <jats:title\/>\n            <jats:p>\n              This study investigated the prevalence and co-occurrence of antimicrobial (AMR) and metal resistance (MR) in aquatic environments with different human impacts. Metagenomes from pristine, rural and urban sites in Australia were analyzed with AMR ++ and customized binning pipelines. AMR was present in all environments, while MR was mainly in rural and urban samples. AMR gene diversity was higher in rural and urban sites, exhibiting resistance to more antibiotic classes (\n              <jats:italic>n<\/jats:italic>\n              = 10) than the pristine site (\n              <jats:italic>n<\/jats:italic>\n              = 4). Metal and multicompound resistance was more frequent in rural (14%) compared to urban samples (5%). Pristine samples lacked multidrug and multicompound resistance and had lower resistance to aminoglycosides and the MLS group. Multiresistance was evidenced by copper and aminocoumarin resistance in rural samples and aminoglycoside and mercury resistance in\n              <jats:italic>Pseudomonas<\/jats:italic>\n              in all environments. These findings highlight the impact of human activities on AMR and MR spread, emphasizing the need for environmental monitoring and management.\n            <\/jats:p>\n          <\/jats:sec>\n          <jats:sec>\n            <jats:title>IMPORTANCE<\/jats:title>\n            <jats:p>Antimicrobial resistance (AMR) and metal resistance (MR) are critical global health concerns exacerbated by anthropogenic activities. The intricate mechanism underlying the interaction among anthropogenic activities, microbial communities, and resistance remains enigmatic. We developed novel bioinformatic pipelines to unveil this interaction in three aquatic environments. Our findings demonstrate the presence of specific bacterial communities that drive AMR and MR in rural and urban environments. This study underscores the significance of proper agricultural practices, comprehensive monitoring, and management strategies to reduce anthropogenic impacts on environmental resistance.<\/jats:p>\n          <\/jats:sec>","DOI":"10.1128\/aem.02317-24","type":"journal-article","created":{"date-parts":[[2025,3,12]],"date-time":"2025-03-12T13:00:31Z","timestamp":1741784431000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":6,"title":["The impact of anthropogenic activities on antimicrobial and heavy metal resistance in aquatic environments"],"prefix":"10.1128","volume":"91","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-2064-8897","authenticated-orcid":true,"given":"Md Javed","family":"Foysal","sequence":"first","affiliation":[{"name":"School of Environmental and Life Sciences, The University of Newcastle","place":["Callaghan, Australia"]},{"name":"Australian Research Council Centre of Excellence in Synthetic Biology, Macquarie University","place":["Sydney, Australia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6113-772X","authenticated-orcid":true,"given":"Brett A.","family":"Neilan","sequence":"additional","affiliation":[{"name":"School of Environmental and Life Sciences, The University of Newcastle","place":["Callaghan, Australia"]},{"name":"Australian Research Council Centre of Excellence in Synthetic Biology, Macquarie University","place":["Sydney, Australia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3883-4428","authenticated-orcid":true,"given":"Verlaine","family":"Timms","sequence":"additional","affiliation":[{"name":"School of Environmental and Life Sciences, The University of Newcastle","place":["Callaghan, Australia"]},{"name":"Australian Research Council Centre of Excellence in Synthetic Biology, Macquarie University","place":["Sydney, Australia"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_4_2_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.aquatox.2022.106221"},{"key":"e_1_3_4_3_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jenvman.2022.115521"},{"key":"e_1_3_4_4_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-019-0503-9"},{"key":"e_1_3_4_5_2","doi-asserted-by":"publisher","DOI":"10.3390\/w14071161"},{"key":"e_1_3_4_6_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2023.161386"},{"key":"e_1_3_4_7_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.envint.2019.105007"},{"key":"e_1_3_4_8_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.envpol.2022.119326"},{"key":"e_1_3_4_9_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2016.155"},{"key":"e_1_3_4_10_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2012.00399"},{"key":"e_1_3_4_11_2","doi-asserted-by":"publisher","DOI":"10.1007\/s11356-018-2978-y"},{"key":"e_1_3_4_12_2","doi-asserted-by":"publisher","DOI":"10.1080\/00207233.2020.1804741"},{"key":"e_1_3_4_13_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.watres.2017.07.048"},{"key":"e_1_3_4_14_2","doi-asserted-by":"publisher","DOI":"10.1021\/acs.est.6b05100"},{"key":"e_1_3_4_15_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0027300"},{"key":"e_1_3_4_16_2","doi-asserted-by":"publisher","DOI":"10.4161\/gmic.24627"},{"key":"e_1_3_4_17_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2018.11.372"},{"key":"e_1_3_4_18_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6941.2009.00823.x"},{"key":"e_1_3_4_19_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0242987"},{"key":"e_1_3_4_20_2","doi-asserted-by":"publisher","DOI":"10.1128\/spectrum.01907-21"},{"key":"e_1_3_4_21_2","doi-asserted-by":"publisher","DOI":"10.1186\/s40168-022-01241-y"},{"key":"e_1_3_4_22_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.envpol.2019.113067"},{"key":"e_1_3_4_23_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.tim.2013.11.001"},{"key":"e_1_3_4_24_2","doi-asserted-by":"publisher","DOI":"10.1007\/s11356-014-2509-4"},{"key":"e_1_3_4_25_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhazmat.2024.134661"},{"key":"e_1_3_4_26_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.csbj.2020.12.006"},{"key":"e_1_3_4_27_2","doi-asserted-by":"publisher","DOI":"10.1111\/1462-2920.16453"},{"key":"e_1_3_4_28_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.envint.2020.106034"},{"key":"e_1_3_4_29_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.watres.2023.120980"},{"key":"e_1_3_4_30_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-022-01089-w"},{"key":"e_1_3_4_31_2","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms9040842"},{"key":"e_1_3_4_32_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.biortech.2020.123817"},{"key":"e_1_3_4_33_2","doi-asserted-by":"publisher","DOI":"10.1134\/S1995425521020074"},{"key":"e_1_3_4_34_2","doi-asserted-by":"publisher","DOI":"10.1111\/raq.12677"},{"key":"e_1_3_4_35_2","doi-asserted-by":"publisher","DOI":"10.1061\/(ASCE)0733-9372(2005)131:9(1239)"},{"key":"e_1_3_4_36_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.marpolbul.2020.111057"},{"key":"e_1_3_4_37_2","doi-asserted-by":"publisher","DOI":"10.1016\/B978-0-323-85577-8.00006-8"},{"key":"e_1_3_4_38_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2023.168516"},{"key":"e_1_3_4_39_2","doi-asserted-by":"publisher","DOI":"10.1038\/s42003-020-01468-1"},{"key":"e_1_3_4_40_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkac1047"},{"key":"e_1_3_4_41_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.aqrep.2023.101462"},{"key":"e_1_3_4_42_2","doi-asserted-by":"publisher","DOI":"10.1007\/s10661-023-11569-z"},{"key":"e_1_3_4_43_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhazmat.2024.133536"},{"key":"e_1_3_4_44_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.marpolbul.2022.113675"},{"key":"e_1_3_4_45_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2024.170988"},{"key":"e_1_3_4_46_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2023.162194"},{"key":"e_1_3_4_47_2","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-030-40422-2_6"},{"key":"e_1_3_4_48_2","volume-title":"Australian Bureau of Metrology","author":"BOM","year":"2020","unstructured":"BOM. 2020. Australian Bureau of Metrology. New South Wales."},{"key":"e_1_3_4_49_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-018-0192-9"},{"key":"e_1_3_4_50_2","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics12010073"},{"key":"e_1_3_4_51_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00571-20"},{"key":"e_1_3_4_52_2","doi-asserted-by":"publisher","unstructured":"Girdhar M Tabassum Z Singh K Mohan A. 2022. A review on the resistance and accumulation of heavy metals by different microbial strains 219. doi:10.5772\/intechopen.101613","DOI":"10.5772\/intechopen.101613"},{"key":"e_1_3_4_53_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.ecoenv.2021.112863"},{"key":"e_1_3_4_54_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.eti.2022.102513"},{"key":"e_1_3_4_55_2","doi-asserted-by":"publisher","DOI":"10.3846\/16486897.2015.1068781"},{"key":"e_1_3_4_56_2","doi-asserted-by":"publisher","DOI":"10.5620\/eaht.2023024"},{"key":"e_1_3_4_57_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00284-020-02052-w"},{"key":"e_1_3_4_58_2","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms10061225"},{"key":"e_1_3_4_59_2","doi-asserted-by":"publisher","DOI":"10.1111\/1469-0691.12359"},{"key":"e_1_3_4_60_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2014.226"},{"key":"e_1_3_4_61_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2018.00852"},{"key":"e_1_3_4_62_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2020.142217"},{"key":"e_1_3_4_63_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-015-2153-5"},{"key":"e_1_3_4_64_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1348-0421.1992.tb02129.x"},{"key":"e_1_3_4_65_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jafr.2022.100474"},{"key":"e_1_3_4_66_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2018.01359"},{"key":"e_1_3_4_67_2","doi-asserted-by":"publisher","DOI":"10.3354\/meps09052"},{"key":"e_1_3_4_68_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00227-009-1282-2"},{"key":"e_1_3_4_69_2","unstructured":"Andrews S. 2010. FastQC: a quality control tool for high throughput sequence data. https:\/\/doi.org\/citeulike-article-id:11583827"},{"key":"e_1_3_4_70_2","volume-title":"Lawrence Berkeley National Lab (LBNL)","author":"Bushnell B","year":"2014","unstructured":"Bushnell B. 2014. BBMap: a fast, accurate, splice-aware aligner. Lawrence Berkeley National Lab (LBNL); Berkeley, CA (United States)"},{"key":"e_1_3_4_71_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv033"},{"key":"e_1_3_4_72_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt086"},{"key":"e_1_3_4_73_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1891-0"},{"key":"e_1_3_4_74_2","doi-asserted-by":"publisher","DOI":"10.7717\/peerj-cs.104"},{"key":"e_1_3_4_75_2","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.1923"},{"key":"e_1_3_4_76_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp352"},{"key":"e_1_3_4_77_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-385"},{"key":"e_1_3_4_78_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0061217"},{"key":"e_1_3_4_79_2","unstructured":"Allaire J Ellis P Gandrud C Kuo K Lewis B Owen J Russell K Rogers J Sese C Yetman C. 2017. Package \u201cnetworkD3\u201d. D3 javascript network graphs from R. https:\/\/doi.org\/https:\/\/cran.r-project.org\/package=networkD3."},{"key":"e_1_3_4_80_2","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.7359"},{"key":"e_1_3_4_81_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv638"},{"key":"e_1_3_4_82_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-019-1058-x"},{"key":"e_1_3_4_83_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-018-0171-1"},{"key":"e_1_3_4_84_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.186072.114"},{"key":"e_1_3_4_85_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-021-22757-1"}],"container-title":["Applied and Environmental Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/aem.02317-24","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/aem.02317-24","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,4,23]],"date-time":"2025-04-23T13:03:56Z","timestamp":1745413436000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/aem.02317-24"}},"subtitle":[],"editor":[{"given":"John R.","family":"Spear","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2025,4,23]]},"references-count":84,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2025,4,23]]}},"alternative-id":["10.1128\/aem.02317-24"],"URL":"https:\/\/doi.org\/10.1128\/aem.02317-24","relation":{},"ISSN":["0099-2240","1098-5336"],"issn-type":[{"value":"0099-2240","type":"print"},{"value":"1098-5336","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,4,23]]},"assertion":[{"value":"2024-11-19","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2025-02-18","order":2,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2025-03-12","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e02317-24"}}