{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,14]],"date-time":"2026-10-14T12:24:24Z","timestamp":1791980664578,"version":"4.4.0"},"reference-count":144,"publisher":"American Society for Microbiology","issue":"4","license":[{"start":{"date-parts":[[2025,4,23]],"date-time":"2025-04-23T00:00:00Z","timestamp":1745366400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2025,4,23]],"date-time":"2025-04-23T00:00:00Z","timestamp":1745366400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["Appl Environ Microbiol"],"published-print":{"date-parts":[[2025,4,23]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n          <jats:sec>\n            <jats:title\/>\n            <jats:p>\n              <jats:italic>Salmonella enterica<\/jats:italic>\n              serovar Braenderup (\n              <jats:italic>S. enterica<\/jats:italic>\n              ser. Braenderup) is an important clinical serovar in the United States. This serovar was reported by the CDC in 2017 as the fifth most common\n              <jats:italic>Salmonella enterica<\/jats:italic>\n              serovar associated with outbreaks in the United States, which have been linked to both fresh produce and food animal products. The goals of this study were to compare the relatedness of human clinical isolates from southeastern USA (Tennessee (\n              <jats:italic>n<\/jats:italic>\n              = 106), Kentucky (\n              <jats:italic>n<\/jats:italic>\n              = 48), Virginia (\n              <jats:italic>n<\/jats:italic>\n              = 252), South Carolina (\n              <jats:italic>n<\/jats:italic>\n              = 109), Georgia (\n              <jats:italic>n<\/jats:italic>\n              = 159), Alabama (\n              <jats:italic>n<\/jats:italic>\n              = 8), Arkansas (\n              <jats:italic>n<\/jats:italic>\n              = 26), and Louisiana (\n              <jats:italic>n<\/jats:italic>\n              = 91)) and global clinical (\n              <jats:italic>n<\/jats:italic>\n              = 5,153) and nonclinical (\n              <jats:italic>n<\/jats:italic>\n              = 1,053) isolates obtained from the NCBI. Additionally, we also examined the population structure of\n              <jats:italic>S. enterica<\/jats:italic>\n              ser. Braenderup strains (\n              <jats:italic>n<\/jats:italic>\n              = 3,131) on EnteroBase and found that all the strains of this serovar are associated with a single cgMLST eBurst group (ceBG 185), confirming that this serovar is monophyletic. We divided the\n              <jats:italic>S. enterica<\/jats:italic>\n              ser. Braenderup population into two clades (Clade I and Clade II) and one clade group (Clade Group III). The composition of distinct environmental isolates in the clades differed: Clade I was significantly associated with produce (90.7%;\n              <jats:italic>P<\/jats:italic>\n              &lt; 0.0001) and water, soil, and sediment (76.9%;\n              <jats:italic>P<\/jats:italic>\n              &lt; 0.0001), and Clade II was significantly associated with poultry environments (62.8%;\n              <jats:italic>P<\/jats:italic>\n              &lt; 0.0001). The clade-specific gene associations (e.g., Clade I-associated competence proteins and cytochrome_c_asm protein and Clade II-associated heme-exporter protein and dimethyl sulfoxide [DMSO] reductase-encoding genes) provide potential insights into possible mechanisms driving environmental adaptation and host\u2013pathogen interaction. Phylogenetic analyses identified 218 molecular epidemiological clusters in the current study, which represented a greater proportion of potentially outbreak-related isolates than previously estimated.\n            <\/jats:p>\n          <\/jats:sec>\n          <jats:sec>\n            <jats:title>IMPORTANCE<\/jats:title>\n            <jats:p>\n              This study provides insights into the genomic diversity of\n              <jats:italic>S. enterica<\/jats:italic>\n              ser. Braenderup by revealing distinct clade-specific source attribution patterns and showing that a greater proportion of isolates were associated with epidemiological clusters based on the genomic relatedness than previously estimated. Specifically, we analyzed the diversity of human clinical isolates from southeastern USA and compared them with the global clinical and nonclinical isolates. Our analysis showed different clades of\n              <jats:italic>S. enterica<\/jats:italic>\n              ser. Braenderup linked to different environments, providing insights on the potential source of human sporadic infection and outbreaks. These findings can enhance public health surveillance and response strategies targeting\n              <jats:italic>S. enterica<\/jats:italic>\n              serovar Braenderup by expanding our understanding of potential transmission pathways and the genomic diversity of clinical and environmental isolates.\n            <\/jats:p>\n          <\/jats:sec>","DOI":"10.1128\/aem.02594-24","type":"journal-article","created":{"date-parts":[[2025,3,21]],"date-time":"2025-03-21T13:18:12Z","timestamp":1742563092000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":5,"title":["<i>Salmonella enterica<\/i>\n            serovar Braenderup shows clade-specific source associations and a high proportion of molecular epidemiological clustering"],"prefix":"10.1128","volume":"91","author":[{"ORCID":"https:\/\/orcid.org\/0009-0003-7789-3505","authenticated-orcid":false,"given":"Harleen K.","family":"Chaggar","sequence":"first","affiliation":[{"name":"Department of Food Science, University of Tennessee","place":["Knoxville, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1799-3171","authenticated-orcid":true,"given":"Lauren K.","family":"Hudson","sequence":"additional","affiliation":[{"name":"Department of Food Science, University of Tennessee","place":["Knoxville, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kelly","family":"Orejuela","sequence":"additional","affiliation":[{"name":"Tennessee Department of Health","place":["Nashville, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Linda","family":"Thomas","sequence":"additional","affiliation":[{"name":"Division of Laboratory Services, Tennessee Department of Health","place":["Nashville, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Maya","family":"Spann","sequence":"additional","affiliation":[{"name":"Division of Laboratory Services, Tennessee Department of Health","place":["Nashville, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Katie N.","family":"Garman","sequence":"additional","affiliation":[{"name":"Division of Laboratory Services, Tennessee Department of Health","place":["Nashville, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"John R.","family":"Dunn","sequence":"additional","affiliation":[{"name":"Tennessee Department of Health","place":["Nashville, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2631-0846","authenticated-orcid":true,"given":"Thomas G.","family":"Denes","sequence":"additional","affiliation":[{"name":"Department of Food Science, University of Tennessee","place":["Knoxville, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_4_2_2","doi-asserted-by":"publisher","DOI":"10.1155\/2015\/520179"},{"key":"e_1_3_4_3_2","doi-asserted-by":"publisher","DOI":"10.14202\/vetworld.2019.504-521"},{"key":"e_1_3_4_4_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.186.17.5883-5898.2004"},{"key":"e_1_3_4_5_2","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.00579-12"},{"key":"e_1_3_4_6_2","doi-asserted-by":"publisher","DOI":"10.3390\/ijms21155226"},{"key":"e_1_3_4_7_2","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000906"},{"key":"e_1_3_4_8_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1007261"},{"key":"e_1_3_4_9_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.00969-10"},{"key":"e_1_3_4_10_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.43.8.3688-3698.2005"},{"key":"e_1_3_4_11_2","doi-asserted-by":"publisher","DOI":"10.1016\/0168-1605(94)90202-x"},{"key":"e_1_3_4_12_2","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.micro.59.030804.121325"},{"key":"e_1_3_4_13_2","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-60327-999-4_11"},{"key":"e_1_3_4_14_2","unstructured":"National enteric disease surveillance: Salmonella annual report. 2016. https:\/\/stacks.cdc.gov\/view\/cdc\/58450."},{"key":"e_1_3_4_15_2","unstructured":"Dewey-Mattia D Kisselburgh H Manikonda K Silver R Subramhanya S Sundararaman P Whitham H Crowe S. 2017. Surveillance for foodborne disease outbreaks United States 2017: annual report"},{"key":"e_1_3_4_16_2","doi-asserted-by":"publisher","DOI":"10.1080\/09603123.2011.613114"},{"key":"e_1_3_4_17_2","unstructured":"Doyle ME. 2013. White paper on human illness caused by Salmonella from all food and non-food vectors update 2013"},{"key":"e_1_3_4_18_2","doi-asserted-by":"publisher","DOI":"10.1590\/1806-9061-2020-1259"},{"key":"e_1_3_4_19_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.foodcont.2019.106915"},{"key":"e_1_3_4_20_2","doi-asserted-by":"publisher","DOI":"10.1186\/1751-0147-44-181"},{"key":"e_1_3_4_21_2","doi-asserted-by":"publisher","DOI":"10.2307\/4593527"},{"key":"e_1_3_4_22_2","doi-asserted-by":"publisher","DOI":"10.2307\/4593310"},{"key":"e_1_3_4_23_2","doi-asserted-by":"publisher","DOI":"10.4315\/0362-028X.JFP-19-302"},{"key":"e_1_3_4_24_2","doi-asserted-by":"publisher","DOI":"10.1002\/vms3.234"},{"key":"e_1_3_4_25_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.02829-17"},{"key":"e_1_3_4_26_2","doi-asserted-by":"publisher","DOI":"10.2307\/1590948"},{"key":"e_1_3_4_27_2","doi-asserted-by":"publisher","DOI":"10.1046\/j.1469-0691.2000.00148.x"},{"key":"e_1_3_4_28_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0161497"},{"key":"e_1_3_4_29_2","doi-asserted-by":"publisher","DOI":"10.1089\/fpd.2012.1347"},{"key":"e_1_3_4_30_2","doi-asserted-by":"publisher","DOI":"10.1017\/S0950268815000151"},{"key":"e_1_3_4_31_2","article-title":"Salmonella serotypes isolated from minced meat beef, mutton and pork in Addis Ababa, Ethiopia","volume":"5","author":"Ejeta G","year":"2004","unstructured":"Ejeta G, Molla B, Alemayehu D, Muckle A. 2004. Salmonella serotypes isolated from minced meat beef, mutton and pork in Addis Ababa, Ethiopia. Rev M\u00e9d V\u00e9t 5","journal-title":"Rev M\u00e9d V\u00e9t"},{"key":"e_1_3_4_32_2","doi-asserted-by":"publisher","DOI":"10.1128\/am.21.2.358-362.1971"},{"key":"e_1_3_4_33_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0377-8401(98)00186-2"},{"key":"e_1_3_4_34_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0128937"},{"key":"e_1_3_4_35_2","doi-asserted-by":"publisher","DOI":"10.1637\/21-00091"},{"key":"e_1_3_4_36_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijfoodmicro.2011.12.024"},{"key":"e_1_3_4_37_2","doi-asserted-by":"publisher","DOI":"10.3382\/ps\/pew036"},{"key":"e_1_3_4_38_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.foodres.2011.02.051"},{"key":"e_1_3_4_39_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.02191-14"},{"key":"e_1_3_4_40_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.envres.2012.02.005"},{"key":"e_1_3_4_41_2","doi-asserted-by":"publisher","DOI":"10.2807\/1560-7917.ES.2024.29.1.2300273"},{"key":"e_1_3_4_42_2","unstructured":"Multi\u2010country outbreak of Salmonella Braenderup ST22 presumed to be linked to imported melons. 2021. EFSA"},{"key":"e_1_3_4_43_2","unstructured":"CDC. 2004. Outbreaks of Salmonella infections associated with eating Roma tomatoes ---United States and Canada 2004. Available from: https:\/\/www.cdc.gov\/mmwr\/preview\/mmwrhtml\/mm5413a1.htm. Retrieved 22 Mar 2022."},{"key":"e_1_3_4_44_2","doi-asserted-by":"publisher","DOI":"10.1017\/S0950268814002167"},{"key":"e_1_3_4_45_2","doi-asserted-by":"publisher","DOI":"10.1186\/BF03548183"},{"key":"e_1_3_4_46_2","doi-asserted-by":"publisher","DOI":"10.18926\/AMO\/45264"},{"key":"e_1_3_4_47_2","unstructured":"CDC. 2019. Salmonella Braenderup infections associated with mangoes - Salmonella. Available from: https:\/\/www.cdc.gov\/salmonella\/braenderup-08-12\/index.html. Retrieved 22 Mar 2022."},{"key":"e_1_3_4_48_2","unstructured":"Salmonella Braenderup infections linked to nut butter. 2019. CDC. Available from: https:\/\/www.cdc.gov\/salmonella\/braenderup-08-14\/index.html. Retrieved 22 Mar 2022."},{"key":"e_1_3_4_49_2","unstructured":"Multistate outbreak of Salmonella Braenderup infections linked to rose acre farms shell eggs (final update). 2019. CDC. Available from: https:\/\/www.cdc.gov\/salmonella\/braenderup-04-18\/index.html. Retrieved 22 Mar 2022."},{"key":"e_1_3_4_50_2","unstructured":"Foodborne illness outbreak database. 2022. Available from: http:\/\/outbreakdatabase.com\/details\/2016-multistate-outbreak-of-salmonella-braenderup-linked-to-mung-bean-sprouts\/?outbreak=Braenderup. Retrieved 23 May 2022."},{"key":"e_1_3_4_51_2","unstructured":"Foodborne illness outbreak database. 2022. Available from: http:\/\/outbreakdatabase.com\/details\/2018-outbreak-of-salmonella-braenderup-associated-with-burien-fresh-smoothies-washington\/?outbreak=Braenderup. Retrieved 23 May 2022."},{"key":"e_1_3_4_52_2","unstructured":"Salmonella outbreak associated with Burien fresh smoothies in Burien - King County. Available from: https:\/\/kingcounty.gov\/depts\/health\/communicable-diseases\/disease-control\/outbreak\/burien-fresh-smoothies-2018-Aug.aspx. Retrieved 27 May 2022."},{"key":"e_1_3_4_53_2","first-page":"169","article-title":"Multiple-serotype Salmonella outbreaks in two state prisons - Arkansas, August 2012","volume":"63","author":"Gicquelais RE","year":"2014","unstructured":"Gicquelais RE, Morris JF, Matthews S, Gladden L, Safi H, Grayson C, Slayton RB, Newton AE, Bordonaro R, Wheeler JG, Smith N, Bosch SA, Haselow DT, Arkansas Department of Health, Centers for Disease Control and Prevention (CDC). 2014. Multiple-serotype Salmonella outbreaks in two state prisons - Arkansas, August 2012. MMWR Morb Mortal Wkly Rep 63:169\u2013173. https:\/\/pmc.ncbi.nlm.nih.gov\/articles\/PMC4584523\/.","journal-title":"MMWR Morb Mortal Wkly Rep"},{"key":"e_1_3_4_54_2","unstructured":"Foodborne illness outbreak database. Available from: http:\/\/www.outbreakdatabase.com\/details\/2009-outbreak-of-salmonella-braenderup-linked-to-umpqua-dairy-products-co.-pasteurized-milk-oregon. Retrieved 23 May 2022."},{"key":"e_1_3_4_55_2","unstructured":"Oregon dairy\u2019s problem might be in the packaging. 2010. Seattle FSN 1012 FAFF Washington 98104-1008. Food Saf News. Available from: https:\/\/www.foodsafetynews.com\/2010\/08\/oregon-dairys-problem-might-be-in-the-packaging"},{"key":"e_1_3_4_56_2","unstructured":"Foodborne illness outbreak database. Available from: http:\/\/outbreakdatabase.com\/details\/2016-salmonella-braenderup-outbreak-linked-to-potato-salad-iowa\/?outbreak=Braenderup. Retrieved 23 May 2022."},{"key":"e_1_3_4_57_2","unstructured":"Salmonella homepage. CDC. Available from: https:\/\/www.cdc.gov\/salmonella\/index.html. Retrieved 23 May 2022."},{"key":"e_1_3_4_58_2","unstructured":"Drug-resistant nontyphoidal Salmonella.https:\/\/www.cdc.gov\/antimicrobial-resistance\/media\/pdfs\/nt-salmonella-508.pdf."},{"key":"e_1_3_4_59_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu170"},{"key":"e_1_3_4_60_2","unstructured":"Babraham Bioinformatics. FastQC a quality control tool for high throughput sequence data. Available from: https:\/\/www.bioinformatics.babraham.ac.uk\/projects\/fastqc. Retrieved 22 Mar 2022."},{"key":"e_1_3_4_61_2","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2012.0021"},{"key":"e_1_3_4_62_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt086"},{"key":"e_1_3_4_63_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.00323-15"},{"key":"e_1_3_4_64_2","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2019.00276"},{"key":"e_1_3_4_65_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-023-09245-0"},{"key":"e_1_3_4_66_2","doi-asserted-by":"publisher","DOI":"10.1128\/msystems.00467-22"},{"key":"e_1_3_4_67_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0147101"},{"key":"e_1_3_4_68_2","doi-asserted-by":"publisher","DOI":"10.1128\/msphere.00730-21"},{"key":"e_1_3_4_69_2","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.02303-18"},{"key":"e_1_3_4_70_2","unstructured":"HierCC equivalents \u2014 EnteroBase documentation. Available from: https:\/\/enterobase.readthedocs.io\/en\/latest\/HierCC_lookup.html. Retrieved 21 Sep 2023."},{"key":"e_1_3_4_71_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv271"},{"key":"e_1_3_4_72_2","unstructured":"Bacterial and viral bioinformatics resource center. BV-BRC. Available from: https:\/\/www.bv-brc.org. Retrieved 03 Apr 2023."},{"key":"e_1_3_4_73_2","doi-asserted-by":"publisher","DOI":"10.1039\/C5AY02550H"},{"key":"e_1_3_4_74_2","unstructured":"Proposal of a taxonomic nomenclature for the bacillus cereus group which reconciles genomic definitions of bacterial species with clinical and industrial phenotypes. Available from: https:\/\/journals.asm.org\/doi\/epub\/10.1128\/mBio.00034-20. Retrieved 03 Apr 2023."},{"key":"e_1_3_4_75_2","unstructured":"Tonkin-HillG. 2023. fastbaps. R"},{"key":"e_1_3_4_76_2","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msy096"},{"key":"e_1_3_4_77_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkw290"},{"key":"e_1_3_4_78_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu153"},{"key":"e_1_3_4_79_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-018-2164-8"},{"key":"e_1_3_4_80_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1832-y"},{"key":"e_1_3_4_81_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-024-03233-7"},{"key":"e_1_3_4_82_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky1085"},{"key":"e_1_3_4_83_2","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msab293"},{"key":"e_1_3_4_84_2","unstructured":"Protein BLAST: search protein databases using a protein query. Available from: https:\/\/blast.ncbi.nlm.nih.gov\/Blast.cgi?PAGE=Proteins. Retrieved 02 Dec 2024."},{"key":"e_1_3_4_85_2","unstructured":"InterProScan - InterPro. Available from: https:\/\/www.ebi.ac.uk\/interpro\/search\/sequence. Retrieved 02 Dec 2024."},{"key":"e_1_3_4_86_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.mimet.2023.106788"},{"key":"e_1_3_4_87_2","doi-asserted-by":"publisher","DOI":"10.7717\/peerj-cs.20"},{"key":"e_1_3_4_88_2","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000748"},{"key":"e_1_3_4_89_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkx217"},{"key":"e_1_3_4_90_2","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.10256"},{"key":"e_1_3_4_91_2","doi-asserted-by":"publisher","DOI":"10.1128\/spectrum.03876-22"},{"key":"e_1_3_4_92_2","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msg074"},{"key":"e_1_3_4_93_2","unstructured":"FSIS NARMS multi-year report \u2013 2014-2019. Food Safety and Inspection Service. Available from: http:\/\/www.fsis.usda.gov\/news-events\/publications\/fsis-narms-multi-year-report-2014-2019. Retrieved 08 Mar 2024. 08 Mar 2024"},{"key":"e_1_3_4_94_2","doi-asserted-by":"publisher","DOI":"10.1136\/bmjgast-2022-001009"},{"key":"e_1_3_4_95_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.251678.119"},{"key":"e_1_3_4_96_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1002776"},{"key":"e_1_3_4_97_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-020-61254-1"},{"key":"e_1_3_4_98_2","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000425"},{"key":"e_1_3_4_99_2","doi-asserted-by":"publisher","DOI":"10.3201\/eid2501.180835"},{"key":"e_1_3_4_100_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.01758-17"},{"key":"e_1_3_4_101_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-018-33266-5"},{"key":"e_1_3_4_102_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2020.00889"},{"key":"e_1_3_4_103_2","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms9112300"},{"key":"e_1_3_4_104_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.heliyon.2022.e11571"},{"key":"e_1_3_4_105_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0268231"},{"key":"e_1_3_4_106_2","unstructured":"National Outbreak Reporting System (NORS) dashboard. CDC. Available from: https:\/\/wwwn.cdc.gov\/norsdashboard. Retrieved 20 Jun 2024."},{"key":"e_1_3_4_107_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.japr.2020.09.016"},{"key":"e_1_3_4_108_2","doi-asserted-by":"publisher","DOI":"10.1111\/mmi.12709"},{"key":"e_1_3_4_109_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2016.03.018"},{"key":"e_1_3_4_110_2","doi-asserted-by":"publisher","DOI":"10.1128\/iai.00578-22"},{"key":"e_1_3_4_111_2","doi-asserted-by":"publisher","DOI":"10.4315\/0362-028X.JFP-19-310"},{"key":"e_1_3_4_112_2","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics12030552"},{"key":"e_1_3_4_113_2","doi-asserted-by":"publisher","DOI":"10.1111\/zph.12380"},{"key":"e_1_3_4_114_2","doi-asserted-by":"publisher","DOI":"10.3201\/eid1908.121511"},{"key":"e_1_3_4_115_2","doi-asserted-by":"publisher","DOI":"10.1089\/fpd.2008.0232"},{"key":"e_1_3_4_116_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.02831-13"},{"key":"e_1_3_4_117_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2015.00415"},{"key":"e_1_3_4_118_2","doi-asserted-by":"publisher","DOI":"10.1089\/fpd.2017.2416"},{"key":"e_1_3_4_119_2","doi-asserted-by":"publisher","DOI":"10.1186\/1297-9716-42-34"},{"key":"e_1_3_4_120_2","doi-asserted-by":"publisher","DOI":"10.1079\/PAVSNNR20138040"},{"key":"e_1_3_4_121_2","unstructured":"Jagannathan BV Vijayakumar PP. The need for prevention-based food safety programs for fresh produce"},{"key":"e_1_3_4_122_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.02491-12"},{"key":"e_1_3_4_123_2","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25088"},{"key":"e_1_3_4_124_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2018.02980"},{"key":"e_1_3_4_125_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0258583"},{"key":"e_1_3_4_126_2","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M200731200"},{"key":"e_1_3_4_127_2","doi-asserted-by":"publisher","DOI":"10.1099\/mic.0.2007\/014290-0"},{"key":"e_1_3_4_128_2","doi-asserted-by":"publisher","DOI":"10.3390\/ijms21197254"},{"key":"e_1_3_4_129_2","unstructured":"Cytochrome C assembly protein (PF01578). Pfam entry - InterPro. Available from: https:\/\/www.ebi.ac.uk\/interpro\/entry\/pfam\/PF01578. Retrieved 01 Dec 2024."},{"key":"e_1_3_4_130_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.04086-14"},{"key":"e_1_3_4_131_2","unstructured":"CDC. 2018. Template package 4. Centers for Disease Control and Prevention. Available from: https:\/\/www.cdc.gov\/FoodNetFast. Retrieved 28 Feb 2024."},{"key":"e_1_3_4_132_2","doi-asserted-by":"publisher","DOI":"10.15585\/mmwr.mm7140a2"},{"key":"e_1_3_4_133_2","unstructured":"FoodNet 2020 preliminary data | FoodNet. 2022. CDC. Available from: https:\/\/www.cdc.gov\/foodnet\/reports\/prelim-data-intro-2020.html. Retrieved 23 May 2022."},{"key":"e_1_3_4_134_2","doi-asserted-by":"publisher","DOI":"10.1093\/infdis\/jiu574"},{"key":"e_1_3_4_135_2","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msy242"},{"key":"e_1_3_4_136_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.tim.2014.01.006"},{"key":"e_1_3_4_137_2","doi-asserted-by":"publisher","DOI":"10.3390\/foods7100167"},{"key":"e_1_3_4_138_2","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000195"},{"key":"e_1_3_4_139_2","unstructured":"Centers for Disease Control and Prevention (U.S.). 2019. Antibiotic resistance threats in the United States 2019. Centers for Disease Control and Prevention (U.S.)"},{"key":"e_1_3_4_140_2","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/cix669"},{"key":"e_1_3_4_141_2","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(17)30753-3"},{"key":"e_1_3_4_142_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2023.1176317"},{"key":"e_1_3_4_143_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2020.00801"},{"key":"e_1_3_4_144_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jksus.2022.102275"},{"key":"e_1_3_4_145_2","doi-asserted-by":"publisher","DOI":"10.4103\/jms.jms_25_17"}],"container-title":["Applied and Environmental Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/aem.02594-24","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/aem.02594-24","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,4,23]],"date-time":"2025-04-23T13:02:58Z","timestamp":1745413378000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/aem.02594-24"}},"subtitle":[],"editor":[{"given":"Edward G.","family":"Dudley","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2025,4,23]]},"references-count":144,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2025,4,23]]}},"alternative-id":["10.1128\/aem.02594-24"],"URL":"https:\/\/doi.org\/10.1128\/aem.02594-24","relation":{},"ISSN":["0099-2240","1098-5336"],"issn-type":[{"value":"0099-2240","type":"print"},{"value":"1098-5336","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,4,23]]},"assertion":[{"value":"2025-01-23","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2025-01-24","order":2,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2025-03-21","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e02594-24"}}