{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,18]],"date-time":"2026-10-18T03:51:38Z","timestamp":1792295498320,"version":"4.4.0"},"reference-count":90,"publisher":"American Society for Microbiology","issue":"11","license":[{"start":{"date-parts":[[2019,10,18]],"date-time":"2019-10-18T00:00:00Z","timestamp":1571356800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2019,11,1]],"date-time":"2019-11-01T00:00:00Z","timestamp":1572566400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"funder":[{"DOI":"10.13039\/501100000268","name":"UK Research and Innovation | Biotechnology and Biological Sciences Research Council","doi-asserted-by":"publisher","award":["BB\/M011151\/1"],"award-info":[{"award-number":["BB\/M011151\/1"]}],"id":[{"id":"10.13039\/501100000268","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000266","name":"UK Research and Innovation | Engineering and Physical Sciences Research Council","doi-asserted-by":"publisher","award":["EP\/N010124\/1"],"award-info":[{"award-number":["EP\/N010124\/1"]}],"id":[{"id":"10.13039\/501100000266","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["Infect Immun"],"published-print":{"date-parts":[[2019,11]]},"abstract":"<jats:p>\n            The Gram-positive opportunistic pathogen\n            <jats:named-content content-type=\"genus-species\">Enterococcus faecalis<\/jats:named-content>\n            is frequently responsible for nosocomial infections in humans and represents one of the most common bacteria isolated from recalcitrant endodontic (root canal) infections.\n            <jats:named-content content-type=\"genus-species\">E. faecalis<\/jats:named-content>\n            is intrinsically resistant to several antibiotics routinely used in clinical settings (such as cephalosporins and aminoglycosides) and can acquire resistance to vancomycin (vancomycin-resistant enterococci).\n          <\/jats:p>","DOI":"10.1128\/iai.00512-19","type":"journal-article","created":{"date-parts":[[2019,8,22]],"date-time":"2019-08-22T10:48:33Z","timestamp":1566470913000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":83,"title":["Identification of Novel Bacteriophages with Therapeutic Potential That Target\n            <i>Enterococcus faecalis<\/i>"],"prefix":"10.1128","volume":"87","author":[{"given":"M.","family":"Al-Zubidi","sequence":"first","affiliation":[{"name":"Integrated BioSciences, School of Clinical Dentistry, University of Sheffield, Sheffield, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M.","family":"Widziolek","sequence":"additional","affiliation":[{"name":"Integrated BioSciences, School of Clinical Dentistry, University of Sheffield, Sheffield, United Kingdom"},{"name":"Department of Microbiology, Faculty of Biochemistry, Biophysics, and Biotechnology, Jagiellonian University, Cracow, Poland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"E. K.","family":"Court","sequence":"additional","affiliation":[{"name":"Integrated BioSciences, School of Clinical Dentistry, University of Sheffield, Sheffield, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"A. F.","family":"Gains","sequence":"additional","affiliation":[{"name":"Integrated BioSciences, School of Clinical Dentistry, University of Sheffield, Sheffield, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"R. E.","family":"Smith","sequence":"additional","affiliation":[{"name":"Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"K.","family":"Ansbro","sequence":"additional","affiliation":[{"name":"Integrated BioSciences, School of Clinical Dentistry, University of Sheffield, Sheffield, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"A.","family":"Alrafaie","sequence":"additional","affiliation":[{"name":"Integrated BioSciences, School of Clinical Dentistry, University of Sheffield, Sheffield, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"C.","family":"Evans","sequence":"additional","affiliation":[{"name":"Department of Chemical and Biological Engineering, The University of Sheffield, Sheffield, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"C.","family":"Murdoch","sequence":"additional","affiliation":[{"name":"Integrated BioSciences, School of Clinical Dentistry, University of Sheffield, Sheffield, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S.","family":"Mesnage","sequence":"additional","affiliation":[{"name":"Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"C. W. I.","family":"Douglas","sequence":"additional","affiliation":[{"name":"Integrated BioSciences, School of Clinical Dentistry, University of Sheffield, Sheffield, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"A.","family":"Rawlinson","sequence":"additional","affiliation":[{"name":"Integrated BioSciences, School of Clinical Dentistry, University of Sheffield, Sheffield, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"G. P.","family":"Stafford","sequence":"additional","affiliation":[{"name":"Integrated BioSciences, School of Clinical Dentistry, University of Sheffield, Sheffield, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_3_2_2","doi-asserted-by":"publisher","DOI":"10.1086\/421946"},{"key":"e_1_3_3_3_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.mib.2013.01.006"},{"key":"e_1_3_3_4_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.1080613"},{"key":"e_1_3_3_5_2","doi-asserted-by":"publisher","DOI":"10.1179\/joc.2011.23.4.240"},{"key":"e_1_3_3_6_2","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2591.2001.00437.x"},{"key":"e_1_3_3_7_2","doi-asserted-by":"publisher","DOI":"10.4103\/0972-0707.41303"},{"key":"e_1_3_3_8_2","doi-asserted-by":"publisher","DOI":"10.1097\/01.don.0000136205.80807.5a"},{"key":"e_1_3_3_9_2","doi-asserted-by":"publisher","DOI":"10.1034\/j.1399-302X.2003.00072.x"},{"key":"e_1_3_3_10_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.72.6.3658-3663.2004"},{"key":"e_1_3_3_11_2","doi-asserted-by":"publisher","DOI":"10.1093\/clinids\/24.Supplement_1.S80"},{"key":"e_1_3_3_12_2","first-page":"149","article-title":"The emergence of enterococci as a cause of nosocomial infection","volume":"55","author":"Hunt C","year":"1998","unstructured":"Hunt C. 1998. The emergence of enterococci as a cause of nosocomial infection. Br J Biomed Sci 55:149.","journal-title":"Br J Biomed Sci"},{"key":"e_1_3_3_13_2","first-page":"66","article-title":"Experimental phage therapy of burn wound infection: difficult first steps","volume":"4","author":"Rose T","year":"2014","unstructured":"Rose T, Verbeken G, De Vos D, Merabishvili M, Vaneechoutte M, Lavigne R, Jennes S, Zizi M, Pirnay JP. 2014. Experimental phage therapy of burn wound infection: difficult first steps. Int J Burns Trauma 4:66\u201373.","journal-title":"Int J Burns Trauma"},{"key":"e_1_3_3_14_2","doi-asserted-by":"publisher","DOI":"10.12968\/jowc.2009.18.6.42801"},{"key":"e_1_3_3_15_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1749-4486.2009.01973.x"},{"key":"e_1_3_3_16_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41591-019-0437-z"},{"key":"e_1_3_3_17_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2672.2009.04576.x"},{"key":"e_1_3_3_18_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00284-009-9555-z"},{"key":"e_1_3_3_19_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6968.2007.00996.x"},{"key":"e_1_3_3_20_2","doi-asserted-by":"publisher","DOI":"10.1007\/s11262-014-1079-3"},{"key":"e_1_3_3_21_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00096-15"},{"key":"e_1_3_3_22_2","doi-asserted-by":"publisher","DOI":"10.1128\/genomeA.01308-15"},{"key":"e_1_3_3_23_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00705-006-0849-1"},{"key":"e_1_3_3_24_2","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2443.1997.1450343.x"},{"key":"e_1_3_3_25_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1110224109"},{"key":"e_1_3_3_26_2","doi-asserted-by":"publisher","DOI":"10.33073\/pjm-2010-023"},{"key":"e_1_3_3_27_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2014.00236"},{"key":"e_1_3_3_28_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.00149-09"},{"key":"e_1_3_3_29_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.66.9.4313-4323.1998"},{"key":"e_1_3_3_30_2","doi-asserted-by":"publisher","DOI":"10.1128\/jb.185.15.4393-4401.2003"},{"key":"e_1_3_3_31_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1007730"},{"key":"e_1_3_3_32_2","doi-asserted-by":"publisher","DOI":"10.1093\/infdis\/jiu402"},{"key":"e_1_3_3_33_2","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro821"},{"key":"e_1_3_3_34_2","doi-asserted-by":"publisher","DOI":"10.4248\/IJOS11026"},{"key":"e_1_3_3_35_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.00976-13"},{"key":"e_1_3_3_36_2","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.01133-14"},{"key":"e_1_3_3_37_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00705-010-0800-3"},{"key":"e_1_3_3_38_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0080435"},{"key":"e_1_3_3_39_2","doi-asserted-by":"publisher","DOI":"10.1016\/s0042-6822(03)00012-6"},{"key":"e_1_3_3_40_2","doi-asserted-by":"publisher","DOI":"10.1128\/aem.61.12.4348-4356.1995"},{"key":"e_1_3_3_41_2","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2958.2001.02521.x"},{"key":"e_1_3_3_42_2","doi-asserted-by":"publisher","DOI":"10.1128\/jb.151.2.718-722.1982"},{"key":"e_1_3_3_43_2","doi-asserted-by":"publisher","DOI":"10.1021\/bi00846a048"},{"key":"e_1_3_3_44_2","doi-asserted-by":"publisher","DOI":"10.1128\/jb.175.17.5510-5519.1993"},{"key":"e_1_3_3_45_2","doi-asserted-by":"publisher","DOI":"10.1128\/aem.60.9.3204-3211.1994"},{"key":"e_1_3_3_46_2","first-page":"569","article-title":"Characterization of a cloned gene (pip) from lactococcus lactis required for phage infection","volume":"85","author":"Babu K","year":"1994","unstructured":"Babu K, Spence W, Monteville M, Geller B. 1994. Characterization of a cloned gene (pip) from lactococcus lactis required for phage infection. Dev Biol Stand 85:569\u2013575.","journal-title":"Dev Biol Stand"},{"key":"e_1_3_3_47_2","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.01304-16"},{"key":"e_1_3_3_48_2","doi-asserted-by":"publisher","DOI":"10.1128\/iai.68.2.815-823.2000"},{"key":"e_1_3_3_49_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.032448299"},{"key":"e_1_3_3_50_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00430-001-0096-8"},{"key":"e_1_3_3_51_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6968.2006.00112.x"},{"key":"e_1_3_3_52_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.67.10.4538-4545.2001"},{"key":"e_1_3_3_53_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.02115-10"},{"key":"e_1_3_3_54_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01135-10"},{"key":"e_1_3_3_55_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbiotec.2017.01.002"},{"key":"e_1_3_3_56_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0138651"},{"key":"e_1_3_3_57_2","doi-asserted-by":"publisher","DOI":"10.1016\/0003-9969(76)90132-1"},{"key":"e_1_3_3_58_2","doi-asserted-by":"publisher","DOI":"10.1007\/s12275-014-3380-1"},{"key":"e_1_3_3_59_2","doi-asserted-by":"publisher","DOI":"10.1128\/cmr.13.4.547-558.2000"},{"key":"e_1_3_3_60_2","doi-asserted-by":"publisher","DOI":"10.1038\/nrrheum.2011.121"},{"key":"e_1_3_3_61_2","doi-asserted-by":"publisher","DOI":"10.1128\/jb.186.4.1065-1077.2004"},{"key":"e_1_3_3_62_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2018.00326"},{"key":"e_1_3_3_63_2","doi-asserted-by":"publisher","DOI":"10.1016\/0042-6822(70)90218-7"},{"key":"e_1_3_3_64_2","first-page":"434","article-title":"Single-step growth","volume":"4","author":"Carlson K","year":"1994","unstructured":"Carlson K, Miller E. 1994. Single-step growth. Mol Biol Bacteriophage 4:434\u2013437.","journal-title":"Mol Biol Bacteriophage"},{"key":"e_1_3_3_65_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.fm.2012.03.009"},{"key":"e_1_3_3_66_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.02596-05"},{"key":"e_1_3_3_67_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.186.5.1518-1530.2004"},{"key":"e_1_3_3_68_2","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2014-15-3-r46"},{"key":"e_1_3_3_69_2","unstructured":"Li H. 2013. Aligning sequence reads clone sequences and assembly contigs with BWA-MEM. arXiv 1303.3997v2. https:\/\/arxiv.org\/abs\/1303.3997v2."},{"key":"e_1_3_3_70_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu170"},{"key":"e_1_3_3_71_2","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2012.0021"},{"key":"e_1_3_3_72_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu153"},{"key":"e_1_3_3_73_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.2289704"},{"key":"e_1_3_3_74_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/16.22.10881"},{"key":"e_1_3_3_75_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr485"},{"key":"e_1_3_3_76_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkw387"},{"key":"e_1_3_3_77_2","doi-asserted-by":"publisher","DOI":"10.1002\/(SICI)1097-0134(199707)28:3<405::AID-PROT10>3.0.CO;2-L"},{"key":"e_1_3_3_78_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/16.10.944"},{"key":"e_1_3_3_79_2","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2958.1998.00797.x"},{"key":"e_1_3_3_80_2","doi-asserted-by":"publisher","DOI":"10.1099\/vir.0.053991-0"},{"key":"e_1_3_3_81_2","doi-asserted-by":"publisher","DOI":"10.1046\/j.1432-1327.2000.01606.x"},{"key":"e_1_3_3_82_2","doi-asserted-by":"publisher","DOI":"10.1093\/toxsci\/kfg014"},{"key":"e_1_3_3_83_2","doi-asserted-by":"publisher","DOI":"10.1038\/srep36023"},{"key":"e_1_3_3_84_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.0902-0055.2004.00122.x"},{"key":"e_1_3_3_85_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.archoralbio.2004.10.017"},{"key":"e_1_3_3_86_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.joen.2006.03.023"},{"key":"e_1_3_3_87_2","doi-asserted-by":"publisher","DOI":"10.3402\/jom.v4i0.10855"},{"key":"e_1_3_3_88_2","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2008-9-7-r110"},{"key":"e_1_3_3_89_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.42.3.1149-1154.2004"},{"key":"e_1_3_3_90_2","doi-asserted-by":"publisher","DOI":"10.1128\/jb.117.2.360-372.1974"},{"key":"e_1_3_3_91_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/40.3.454"}],"container-title":["Infection and Immunity"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/IAI.00512-19","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/IAI.00512-19","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,3,5]],"date-time":"2022-03-05T11:04:07Z","timestamp":1646478247000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/IAI.00512-19"}},"subtitle":[],"editor":[{"given":"Marvin","family":"Whiteley","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2019,11]]},"references-count":90,"journal-issue":{"issue":"11","published-print":{"date-parts":[[2019,11]]}},"alternative-id":["10.1128\/IAI.00512-19"],"URL":"https:\/\/doi.org\/10.1128\/iai.00512-19","relation":{},"ISSN":["0019-9567","1098-5522"],"issn-type":[{"value":"0019-9567","type":"print"},{"value":"1098-5522","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019,11]]},"assertion":[{"value":"2019-07-03","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2019-08-13","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2019-10-18","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e00512-19"}}