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The rise in clinical cases of treatment-refractory infections of\n                      <jats:italic toggle=\"yes\">M. abscessus<\/jats:italic>\n                      has propelled its research toward novel therapeutic approaches. The number of publications entitled \u201c\n                      <jats:italic toggle=\"yes\">Mycobacterium abscessus\u201d<\/jats:italic>\n                      has increased by ~300% over the last decade, of which the majority of studies exploring the fundamental biology and pathogenesis of Mab have used the reference strain ATCC19977. However, whole-genome sequence analyses, combined with transposon-seq based functional genomics, reveal an open pan-genome with significant variations in the essential genes across ATCC19977 and clinical isolates. These new discoveries demand a careful selection of strains and growth conditions in experimental design. In this minireview, we discuss these challenges and propose a framework for future\n                      <jats:italic toggle=\"yes\">M. abscessus<\/jats:italic>\n                      studies\n                      <jats:italic toggle=\"yes\">in silico<\/jats:italic>\n                      , including a new web-based resource for pangenome analysis,\n                      <jats:italic toggle=\"yes\">in vitro,<\/jats:italic>\n                      and in animal models.\n                    <\/jats:p>\n                  <\/jats:sec>","DOI":"10.1128\/jb.00436-25","type":"journal-article","created":{"date-parts":[[2026,2,4]],"date-time":"2026-02-04T14:02:33Z","timestamp":1770213753000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":2,"title":["<i>Mycobacterium abscessus<\/i>\n                    research: learning from challenges"],"prefix":"10.1128","volume":"208","author":[{"given":"Ryan Z.","family":"Treen","sequence":"first","affiliation":[{"id":[{"id":"https:\/\/ror.org\/050kf9c55","id-type":"ROR","asserted-by":"publisher"}],"name":"Wadsworth Center, New York State Department of Health","place":["Albany, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4045-2365","authenticated-orcid":true,"given":"Mercedes","family":"Gonzalez-Juarrero","sequence":"additional","affiliation":[{"id":[{"id":"https:\/\/ror.org\/03k1gpj17","id-type":"ROR","asserted-by":"publisher"}],"name":"Mycobacteria Research Laboratories, Department of Microbiology, Immunology and Pathology, Colorado State University","place":["Fort Collins, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9212-0258","authenticated-orcid":true,"given":"Mary","family":"Jackson","sequence":"additional","affiliation":[{"id":[{"id":"https:\/\/ror.org\/03k1gpj17","id-type":"ROR","asserted-by":"publisher"}],"name":"Mycobacteria Research Laboratories, Department of Microbiology, Immunology and Pathology, Colorado State University","place":["Fort Collins, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1238-0955","authenticated-orcid":true,"given":"Pascal","family":"Lapierre","sequence":"additional","affiliation":[{"id":[{"id":"https:\/\/ror.org\/050kf9c55","id-type":"ROR","asserted-by":"publisher"}],"name":"Wadsworth Center, New York State Department of Health","place":["Albany, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6604-4458","authenticated-orcid":true,"given":"Laurent","family":"Kremer","sequence":"additional","affiliation":[{"id":[{"id":"https:\/\/ror.org\/051escj72","id-type":"ROR","asserted-by":"publisher"}],"name":"Centre National de la Recherche Scientifique UMR 9004, Institut de Recherche en Infectiologie de Montpellier (IRIM), Universit\u00e9 de Montpellier","place":["Montpellier, France"]},{"name":"INSERM, IRIM","place":["Montpellier, France"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1622-7301","authenticated-orcid":true,"given":"Pallavi","family":"Ghosh","sequence":"additional","affiliation":[{"id":[{"id":"https:\/\/ror.org\/050kf9c55","id-type":"ROR","asserted-by":"publisher"}],"name":"Wadsworth Center, New York State Department of Health","place":["Albany, USA"]},{"id":[{"id":"https:\/\/ror.org\/012zs8222","id-type":"ROR","asserted-by":"publisher"}],"name":"Department of Biomedical Sciences, University at Albany","place":["Albany, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5940-2643","authenticated-orcid":true,"given":"Anil K.","family":"Ojha","sequence":"additional","affiliation":[{"id":[{"id":"https:\/\/ror.org\/050kf9c55","id-type":"ROR","asserted-by":"publisher"}],"name":"Wadsworth Center, New York State Department of Health","place":["Albany, USA"]},{"id":[{"id":"https:\/\/ror.org\/012zs8222","id-type":"ROR","asserted-by":"publisher"}],"name":"Department of Biomedical Sciences, University at Albany","place":["Albany, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_2_2_2","doi-asserted-by":"publisher","DOI":"10.1596\/978-1-4648-0524-0_ch11"},{"key":"e_1_3_2_3_2","volume-title":"Hansen\u2019s disease - the forgotten and neglected disease","author":"Donoghue HD","year":"2018","unstructured":"Donoghue HD, Taylor GM, Mendum TA, Stewart GR, Rigouts L, Lee OYC, Wu HHT, Besra GS, Minnikin DE. 2018. 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