{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,17]],"date-time":"2026-06-17T02:22:45Z","timestamp":1781662965268,"version":"3.54.5"},"reference-count":57,"publisher":"American Society for Microbiology","issue":"21","license":[{"start":{"date-parts":[[2007,11,1]],"date-time":"2007-11-01T00:00:00Z","timestamp":1193875200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["J Bacteriol"],"published-print":{"date-parts":[[2007,11]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n          <jats:p>\n            <jats:italic>Plesiomonas shigelloides<\/jats:italic>\n            is an emerging pathogen that is widespread in the aquatic environment and is responsible for intestinal diseases and extraintestinal infections in humans and other animals. Virtually nothing is known about its genetic diversity, population structure, and evolution, which severely limits epidemiological control. We addressed these questions by developing a multilocus sequence typing (MLST) system based on five genes (\n            <jats:italic>fusA<\/jats:italic>\n            ,\n            <jats:italic>leuS<\/jats:italic>\n            ,\n            <jats:italic>pyrG<\/jats:italic>\n            ,\n            <jats:italic>recG<\/jats:italic>\n            , and\n            <jats:italic>rpoB<\/jats:italic>\n            ) and analyzing 77 epidemiologically unrelated strains from several countries and several ecological sources. The phylogenetic position of\n            <jats:italic>P. shigelloides<\/jats:italic>\n            within family\n            <jats:italic>Enterobacteriaceae<\/jats:italic>\n            was precisely defined by phylogenetic analysis of the same gene portions in other family members. Within\n            <jats:italic>P. shigelloides<\/jats:italic>\n            , high levels of nucleotide diversity (average percentage of nucleotide differences between strains, 1.49%) and genotypic diversity (64 distinct sequence types; Simpson's index, 99.7%) were found, with no salient internal phylogenetic structure. We estimated that homologous recombination in housekeeping genes affects\n            <jats:italic>P. shigelloides<\/jats:italic>\n            alleles and nucleotides 7 and 77 times more frequently than mutation, respectively. These ratios are similar to those observed in the naturally transformable species\n            <jats:italic>Streptococcus pneumoniae<\/jats:italic>\n            with a high rate of recombination. In contrast, recombination within\n            <jats:italic>Salmonella enterica<\/jats:italic>\n            ,\n            <jats:italic>Escherichia coli<\/jats:italic>\n            , and\n            <jats:italic>Yersinia enterocolitica<\/jats:italic>\n            was much less frequent.\n            <jats:italic>P. shigelloides<\/jats:italic>\n            thus stands out among members of the\n            <jats:italic>Enterobacteriaceae<\/jats:italic>\n            . Its high rate of recombination results in a lack of association between genomic background and O and H antigenic factors, as observed for the 51 serotypes found in our sample. Given its robustness and discriminatory power, we recommend MLST as a reference method for population biology studies and epidemiological tracking of\n            <jats:italic>P. shigelloides<\/jats:italic>\n            strains.\n          <\/jats:p>","DOI":"10.1128\/jb.00796-07","type":"journal-article","created":{"date-parts":[[2007,8,11]],"date-time":"2007-08-11T01:00:07Z","timestamp":1186794007000},"page":"7808-7818","update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":58,"title":["Recombining Population Structure of\n            <i>Plesiomonas shigelloides<\/i>\n            (\n            <i>Enterobacteriaceae<\/i>\n            ) Revealed by Multilocus Sequence Typing"],"prefix":"10.1128","volume":"189","author":[{"given":"Anna","family":"Salerno","sequence":"first","affiliation":[{"name":"Unite\u0301 Biodiversite\u0301 des Bacte\u0301ries Pathoge\u0300nes Emergentes, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France"},{"name":"Department of Crop Systems, Forestry and Environmental Sciences, University of Basilicata, Potenza, Italy"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alexis","family":"Dele\u0301toile","sequence":"additional","affiliation":[{"name":"Unite\u0301 Biodiversite\u0301 des Bacte\u0301ries Pathoge\u0300nes Emergentes, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Martine","family":"Lefevre","sequence":"additional","affiliation":[{"name":"Unite\u0301 Biodiversite\u0301 des Bacte\u0301ries Pathoge\u0300nes Emergentes, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ivan","family":"Ciznar","sequence":"additional","affiliation":[{"name":"Slovak Medical University, Faculty of Public Health, 83303 Bratislava, Limbova 12, Slovak Republic"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Karel","family":"Krovacek","sequence":"additional","affiliation":[{"name":"Department of Biomedical Sciences and Veterinary Public Health, Faculty of Veterinary Medicine and Animal Science, SLU, Box 7036, 750 07 Uppsala, Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Patrick","family":"Grimont","sequence":"additional","affiliation":[{"name":"Unite\u0301 Biodiversite\u0301 des Bacte\u0301ries Pathoge\u0300nes Emergentes, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sylvain","family":"Brisse","sequence":"additional","affiliation":[{"name":"Unite\u0301 Biodiversite\u0301 des Bacte\u0301ries Pathoge\u0300nes Emergentes, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_2_2_2","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1016\/j.ijmm.2004.06.028","volume":"294","year":"2004","unstructured":"Achtman, M. 2004. 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