{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T20:20:31Z","timestamp":1790713231195,"version":"4.1.0"},"reference-count":14,"publisher":"American Society for Microbiology","issue":"24","license":[{"start":{"date-parts":[[2010,12,15]],"date-time":"2010-12-15T00:00:00Z","timestamp":1292371200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["J Bacteriol"],"published-print":{"date-parts":[[2010,12,15]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n          <jats:p>\n            <jats:italic>Pantoea vagans<\/jats:italic>\n            is a Gram-negative enterobacterial plant epiphyte of a broad range of plants. Here we report the 4.89-Mb genome sequence of\n            <jats:italic>P. vagans<\/jats:italic>\n            strain C9-1 (formerly\n            <jats:italic>Pantoea agglomerans<\/jats:italic>\n            ), which is commercially registered for biological control of fire blight, a disease of pear and apple trees caused by\n            <jats:italic>Erwinia amylovora.<\/jats:italic>\n          <\/jats:p>","DOI":"10.1128\/jb.01122-10","type":"journal-article","created":{"date-parts":[[2010,10,16]],"date-time":"2010-10-16T00:51:46Z","timestamp":1287190306000},"page":"6486-6487","update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":103,"title":["Genome Sequence of the Biocontrol Agent\n            <i>Pantoea vagans<\/i>\n            Strain C9-1"],"prefix":"10.1128","volume":"192","author":[{"given":"Theo H. M.","family":"Smits","sequence":"first","affiliation":[{"name":"Plant Protection Division, Agroscope Changins-Wa\u0308denswil (ACW), CH-8820 Wa\u0308denswil, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fabio","family":"Rezzonico","sequence":"additional","affiliation":[{"name":"Plant Protection Division, Agroscope Changins-Wa\u0308denswil (ACW), CH-8820 Wa\u0308denswil, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tim","family":"Kamber","sequence":"additional","affiliation":[{"name":"Plant Protection Division, Agroscope Changins-Wa\u0308denswil (ACW), CH-8820 Wa\u0308denswil, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alexander","family":"Goesmann","sequence":"additional","affiliation":[{"name":"Center for Biotechnology (CeBiTec), University of Bielefeld, D-33594 Bielefeld, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carol A.","family":"Ishimaru","sequence":"additional","affiliation":[{"name":"Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Virginia O.","family":"Stockwell","sequence":"additional","affiliation":[{"name":"Department of Plant Pathology, University of Minnesota, St. Paul, Minnesota"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ju\u0308rg E.","family":"Frey","sequence":"additional","affiliation":[{"name":"Plant Protection Division, Agroscope Changins-Wa\u0308denswil (ACW), CH-8820 Wa\u0308denswil, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Brion","family":"Duffy","sequence":"additional","affiliation":[{"name":"Plant Protection Division, Agroscope Changins-Wa\u0308denswil (ACW), CH-8820 Wa\u0308denswil, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_2_2_2","doi-asserted-by":"crossref","first-page":"512","DOI":"10.1093\/oxfordjournals.molbev.a026133","volume":"16","year":"1999","unstructured":"Badger, J. H., and G. J. Olsen. 1999. CRITICA: coding region identification tool invoking comparative analysis. Mol. Biol. Evol. 16 : 512-524.","journal-title":"Mol. Biol. Evol."},{"key":"e_1_3_2_3_2","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1146\/annurev-phyto-080508-081803","volume":"47","year":"2009","unstructured":"Barash, I., and S. Manulis-Sasson. 2009. Recent evolution of bacterial pathogens: the gall-forming Pantoea agglomerans case. Annu. Rev. Phytopathol. 47 : 133-152.","journal-title":"Annu. Rev. Phytopathol."},{"key":"e_1_3_2_4_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.00060-10"},{"key":"e_1_3_2_5_2","doi-asserted-by":"crossref","first-page":"709","DOI":"10.1094\/MPMI.2002.15.7.709","volume":"15","year":"2002","unstructured":"Guo, M., S. Manulis, H. Mor, and I. Barash. 2002. The presence of diverse IS elements and an avrPphD homologue that acts as a virulence factor on the pathogenicity plasmid of Erwinia herbicola pv. gypsophilae. Mol. Plant Microbe Interact. 15 : 709-716.","journal-title":"Mol. Plant Microbe Interact."},{"key":"e_1_3_2_6_2","doi-asserted-by":"crossref","first-page":"746","DOI":"10.1094\/Phyto-78-746","volume":"78","year":"1988","unstructured":"Ishimaru, C. A., E. J. Klos, and R. R. Brubaker. 1988. Multiple antibiotic production by Erwinia herbicola. Phytopathology 78 : 746-750.","journal-title":"Phytopathology"},{"key":"e_1_3_2_7_2","doi-asserted-by":"crossref","first-page":"227","DOI":"10.1146\/annurev.phyto.36.1.227","volume":"36","year":"1998","unstructured":"Johnson, K. B., and V. O. Stockwell. 1998. Management of fire blight: a case study in microbial ecology. Annu. Rev. Phytopathol. 36 : 227-248.","journal-title":"Annu. Rev. Phytopathol."},{"key":"e_1_3_2_8_2","doi-asserted-by":"crossref","first-page":"42","DOI":"10.1093\/nar\/30.1.42","volume":"30","year":"2002","unstructured":"Kanehisa, M., S. Goto, S. Kawashima, and A. Nakaya. 2002. The KEGG databases at GenomeNet. Nucleic Acids Res. 30 : 42-46.","journal-title":"Nucleic Acids Res."},{"key":"e_1_3_2_9_2","doi-asserted-by":"crossref","first-page":"1622","DOI":"10.1093\/bioinformatics\/bth137","volume":"20","year":"2004","unstructured":"McHardy, A. C., A. Goesmann, A. P\u00fchler, and F. Meyer. 2004. Development of joint application strategies for two microbial gene finders. Bioinformatics 20 : 1622-1631.","journal-title":"Bioinformatics"},{"key":"e_1_3_2_10_2","doi-asserted-by":"crossref","first-page":"2187","DOI":"10.1093\/nar\/gkg312","volume":"31","year":"2003","unstructured":"Meyer, F., A. Goesmann, A. C. McHardy, D. Bartels, T. Bekel, J. Clausen, J. Kalinowski, B. Linke, O. Rupp, R. Giegerich, and A. P\u00fchler. 2003. GenDB\u2014an open source genome annotation system for prokaryote genomes. Nucleic Acids Res. 31 : 2187-2195.","journal-title":"Nucleic Acids Res."},{"key":"e_1_3_2_11_2","doi-asserted-by":"crossref","first-page":"204","DOI":"10.1186\/1471-2180-9-204","volume":"9","year":"2009","unstructured":"Rezzonico, F., T. H. M. Smits, E. Montesinos, J. E. Frey, and B. Duffy. 2009. Genotypic comparison of Pantoea agglomerans plant and clinical strains to address biosafety and taxonomic issues. BMC Microbiol. 9 : 204.","journal-title":"BMC Microbiol."},{"key":"e_1_3_2_12_2","doi-asserted-by":"crossref","first-page":"544","DOI":"10.1093\/nar\/26.2.544","volume":"26","year":"1998","unstructured":"Salzberg, S. L., A. L. Delcher, S. Kasif, and O. White. 1998. Microbial gene identification using interpolated Markov models. Nucleic Acids Res. 26 : 544-548.","journal-title":"Nucleic Acids Res."},{"key":"e_1_3_2_13_2","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1186\/1471-2164-11-2","volume":"11","year":"2010","unstructured":"Smits, T. H. M., S. Jaenicke, F. Rezzonico, T. Kamber, A. Goesmann, J. E. Frey, and B. Duffy. 2010. Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163T and comparative genomic insights into plant pathogenicity. BMC Genomics 11 : 2.","journal-title":"BMC Genomics"},{"key":"e_1_3_2_14_2","doi-asserted-by":"crossref","first-page":"384","DOI":"10.1094\/MPMI-23-4-0384","volume":"23","year":"2010","unstructured":"Smits, T. H. M., F. Rezzonico, T. Kamber, J. Blom, A. Goesmann, J. E. Frey, and B. Duffy. 2010. Complete genome sequence of the fire blight pathogen Erwinia amylovora CFBP 1430 and comparison to other Erwinia spp. Mol. Plant Microbe Interact. 23 : 384-393.","journal-title":"Mol. Plant Microbe Interact."},{"key":"e_1_3_2_15_2","doi-asserted-by":"crossref","first-page":"305","DOI":"10.1146\/annurev.phyto.44.070505.143444","volume":"44","year":"2006","unstructured":"Toth, I. K., L. Pritchard, and P. J. R. Birch. 2006. 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