{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,27]],"date-time":"2026-03-27T08:25:14Z","timestamp":1774599914351,"version":"3.50.1"},"reference-count":26,"publisher":"American Society for Microbiology","issue":"21","license":[{"start":{"date-parts":[[2012,11,1]],"date-time":"2012-11-01T00:00:00Z","timestamp":1351728000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["J Bacteriol"],"published-print":{"date-parts":[[2012,11]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n          <jats:p>\n            <jats:named-content xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" content-type=\"genus-species\" xlink:type=\"simple\">Salmonella enterica<\/jats:named-content>\n            serovar Typhi is a human pathogen that causes typhoid fever predominantly in developing countries. In this article, we describe the whole genome sequence of the\n            <jats:named-content xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" content-type=\"genus-species\" xlink:type=\"simple\">S. Typhi<\/jats:named-content>\n            strain CR0044 isolated from a typhoid fever carrier in Kelantan, Malaysia. These data will further enhance the understanding of its host persistence and adaptive mechanism.\n          <\/jats:p>","DOI":"10.1128\/jb.01416-12","type":"journal-article","created":{"date-parts":[[2012,10,8]],"date-time":"2012-10-08T16:51:12Z","timestamp":1349715072000},"page":"5970-5971","update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":23,"title":["Genome Sequence and Comparative Pathogenomics Analysis of a Salmonella enterica Serovar Typhi Strain Associated with a Typhoid Carrier in Malaysia"],"prefix":"10.1128","volume":"194","author":[{"given":"Kien-Pong","family":"Yap","sequence":"first","affiliation":[{"name":"Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia"},{"name":"Laboratory of Biomedical Science and Molecular Microbiology, UMBIO Research Cluster, University of Malaya, Kuala Lumpur, Malaysia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Han Ming","family":"Gan","sequence":"additional","affiliation":[{"name":"ScienceVision SB, Setia Alam, SeksyenU13, Shah Alam, Selangor, Malaysia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cindy Shuan Ju","family":"Teh","sequence":"additional","affiliation":[{"name":"Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia"},{"name":"Laboratory of Biomedical Science and Molecular Microbiology, UMBIO Research Cluster, University of Malaya, Kuala Lumpur, Malaysia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ramani","family":"Baddam","sequence":"additional","affiliation":[{"name":"Pathogen Biology Laboratory, Department of Biotechnology, School of Life Sciences, University of Hyderabad, Hyderabad, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lay-Ching","family":"Chai","sequence":"additional","affiliation":[{"name":"Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia"},{"name":"Laboratory of Biomedical Science and Molecular Microbiology, UMBIO Research Cluster, University of Malaya, Kuala Lumpur, Malaysia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Narender","family":"Kumar","sequence":"additional","affiliation":[{"name":"Pathogen Biology Laboratory, Department of Biotechnology, School of Life Sciences, University of Hyderabad, Hyderabad, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Suma Avasthi","family":"Tiruvayipati","sequence":"additional","affiliation":[{"name":"Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia"},{"name":"Pathogen Biology Laboratory, Department of Biotechnology, School of Life Sciences, University of Hyderabad, Hyderabad, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Niyaz","family":"Ahmed","sequence":"additional","affiliation":[{"name":"Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia"},{"name":"Pathogen Biology Laboratory, Department of Biotechnology, School of Life Sciences, University of Hyderabad, Hyderabad, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kwai-Lin","family":"Thong","sequence":"additional","affiliation":[{"name":"Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia"},{"name":"Laboratory of Biomedical Science and Molecular Microbiology, UMBIO Research Cluster, University of Malaya, Kuala Lumpur, Malaysia"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"235","reference":[{"key":"e_1_3_2_2_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-9-75"},{"key":"e_1_3_2_3_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.00581-12"},{"key":"e_1_3_2_4_2","doi-asserted-by":"publisher","DOI":"10.1093\/genetics\/162.4.1513"},{"key":"e_1_3_2_5_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bti610"},{"key":"e_1_3_2_6_2","doi-asserted-by":"crossref","first-page":"4353","DOI":"10.1073\/pnas.1000862107","article-title":"Gallstones play a significant role in Salmonella spp. gallbladder colonization and carriage","volume":"107","author":"Crawford RW","year":"2010","unstructured":"CrawfordRW . 2010. Gallstones play a significant role in Salmonella spp. gallbladder colonization and carriage. Proc. Natl. Acad. Sci. U. S. A. 107: 4353\u2013 4358.","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"e_1_3_2_7_2","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1086\/649541","article-title":"Global trends in typhoid and paratyphoid fever","volume":"50","author":"Crump J","year":"2010","unstructured":"CrumpJ MintzE . 2010. Global trends in typhoid and paratyphoid fever. Clin. Infect. Dis. 50: 241\u2013 246.","journal-title":"Clin. Infect. Dis."},{"key":"e_1_3_2_8_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.185.7.2330-2337.2003"},{"key":"e_1_3_2_9_2","doi-asserted-by":"crossref","first-page":"1070","DOI":"10.1099\/mic.0.2006\/002907-0","article-title":"The yjbEFGH locus in Escherichia coli K-12 is an operon encoding proteins involved in exopolysaccharide production","volume":"153","author":"Ferrieres L","year":"2007","unstructured":"FerrieresL AslamSN CooperRM ClarkeDJ . 2007. The yjbEFGH locus in Escherichia coli K-12 is an operon encoding proteins involved in exopolysaccharide production. J. Microbiol. 153: 1070\u2013 1080.","journal-title":"J. Microbiol."},{"key":"e_1_3_2_10_2","doi-asserted-by":"crossref","first-page":"264","DOI":"10.1111\/j.1365-2958.2004.04269.x","article-title":"Role of the GGDEF protein family in Salmonella cellulose biosynthesis and biofilm formation","volume":"54","author":"Garcia B","year":"2004","unstructured":"GarciaB . 2004. Role of the GGDEF protein family in Salmonella cellulose biosynthesis and biofilm formation. J. Mol. Microbiol. 54: 264\u2013 277.","journal-title":"J. Mol. Microbiol."},{"key":"e_1_3_2_11_2","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1038\/nrmicro2490","article-title":"Chronic and acute infection of the gall bladder by Salmonella Typhi: understanding the carrier state","volume":"9","author":"Gonzalez-Escobedo G","year":"2011","unstructured":"Gonzalez-EscobedoG MarshallJM GunnJS . 2011. Chronic and acute infection of the gall bladder by Salmonella Typhi: understanding the carrier state. Nat. Rev. Microbiol. 9: 9\u2013 14.","journal-title":"Nat. Rev. Microbiol."},{"key":"e_1_3_2_12_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0000929"},{"key":"e_1_3_2_13_2","doi-asserted-by":"crossref","first-page":"987","DOI":"10.1038\/ng.195","article-title":"High throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi","volume":"40","author":"Holt KE","year":"2008","unstructured":"HoltKE . 2008. High throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Nat. Genet. 40: 987\u2013 993.","journal-title":"Nat. Genet."},{"key":"e_1_3_2_14_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-11-119"},{"key":"e_1_3_2_15_2","doi-asserted-by":"publisher","DOI":"10.1016\/S1567-1348(02)00089-8"},{"key":"e_1_3_2_16_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkm160"},{"key":"e_1_3_2_17_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.00948-07"},{"key":"e_1_3_2_18_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/25.5.955"},{"key":"e_1_3_2_19_2","doi-asserted-by":"crossref","first-page":"633","DOI":"10.1111\/j.1365-2958.2007.06074.x","article-title":"Single amino acid substitutions in either YhjD or MsbA confer viability to 3-deoxy-d-manno-oct-2-ulosonic acid-depleted Escherichia coli","volume":"67","author":"Mamat U","year":"2008","unstructured":"MamatU . 2008. Single amino acid substitutions in either YhjD or MsbA confer viability to 3-deoxy-d-manno-oct-2-ulosonic acid-depleted Escherichia coli. J. Mol. Microbiol. 67: 633\u2013 648.","journal-title":"J. Mol. Microbiol."},{"key":"e_1_3_2_20_2","doi-asserted-by":"publisher","DOI":"10.1038\/35101607"},{"key":"e_1_3_2_21_2","doi-asserted-by":"crossref","first-page":"3571","DOI":"10.1099\/mic.0.27041-0","article-title":"Comparative genomics of the KdgR regulon in Erwinia chrysanthemi 3937 and other gamma-proteobacteria","volume":"150","author":"Rodionov DA","year":"2004","unstructured":"RodionovDA GelfandMS PattatNHC . 2004. Comparative genomics of the KdgR regulon in Erwinia chrysanthemi 3937 and other gamma-proteobacteria. J. Microbiol. 150: 3571\u2013 3590.","journal-title":"J. Microbiol."},{"key":"e_1_3_2_22_2","doi-asserted-by":"crossref","first-page":"900","DOI":"10.1023\/A:1005564822630","article-title":"Carcinoma of the gallbladder\u2014is it a sequel of typhoid","volume":"45","author":"Shukla VK","year":"2000","unstructured":"ShuklaVK SinghH PandeyM UpadhyaySK NathG . 2000. Carcinoma of the gallbladder\u2014is it a sequel of typhoid? Dig. Dis. Sci. 45: 900\u2013 903.","journal-title":"Dig. Dis. Sci."},{"key":"e_1_3_2_23_2","doi-asserted-by":"crossref","first-page":"1135","DOI":"10.1128\/JCM.32.5.1135-1141.1994","article-title":"Epidemiologic analysis of sporadic Salmonella Typhi isolates and those from outbreaks by pulsed-field gel electrophoresis, J","volume":"32","author":"Thong KL","year":"1994","unstructured":"ThongKL CheongYM PuthuchearySD KohCL PangT . 1994. Epidemiologic analysis of sporadic Salmonella Typhi isolates and those from outbreaks by pulsed-field gel electrophoresis, J. Clin. Microbiol. 32: 1135\u2013 1141.","journal-title":"Clin. Microbiol."},{"key":"e_1_3_2_24_2","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1016\/S0923-2508(97)85243-6","article-title":"Genome size variation among recent human isolates of Salmonella Typhi","volume":"148","author":"Thong KL","year":"1996","unstructured":"ThongKL PuthuchearySD PangT . 1996. Genome size variation among recent human isolates of Salmonella Typhi. Res. Microbiol. 148: 229\u2013 235.","journal-title":"Res. Microbiol."},{"key":"e_1_3_2_25_2","doi-asserted-by":"publisher","DOI":"10.1128\/jcm.33.7.1938-1941.1995"},{"key":"e_1_3_2_26_2","doi-asserted-by":"crossref","first-page":"2894","DOI":"10.1128\/IAI.69.5.2894-2901.2001","article-title":"Salmonella enterica serovar Typhi possesses a unique repertoire of fimbrial gene sequences","volume":"69","author":"Townsend SM","year":"2001","unstructured":"TownsendSM . 2001. Salmonella enterica serovar Typhi possesses a unique repertoire of fimbrial gene sequences. J. Infect. Immun. 69: 2894\u2013 2901.","journal-title":"J. Infect. Immun."},{"key":"e_1_3_2_27_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.074492.107"}],"container-title":["Journal of Bacteriology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/JB.01416-12","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/JB.01416-12","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,7,29]],"date-time":"2021-07-29T17:28:08Z","timestamp":1627579688000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/JB.01416-12"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,11]]},"references-count":26,"journal-issue":{"issue":"21","published-print":{"date-parts":[[2012,11]]}},"alternative-id":["10.1128\/JB.01416-12"],"URL":"https:\/\/doi.org\/10.1128\/jb.01416-12","relation":{},"ISSN":["0021-9193","1098-5530"],"issn-type":[{"value":"0021-9193","type":"print"},{"value":"1098-5530","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,11]]},"assertion":[{"value":"2012-08-06","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2012-08-17","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2012-10-08","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}