{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,8,24]],"date-time":"2024-08-24T11:34:36Z","timestamp":1724499276997},"reference-count":35,"publisher":"American Society for Microbiology","issue":"8","license":[{"start":{"date-parts":[[2006,8,1]],"date-time":"2006-08-01T00:00:00Z","timestamp":1154390400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["J Clin Microbiol"],"published-print":{"date-parts":[[2006,8]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n          <jats:p>\n            We studied two large\n            <jats:italic>Mycobacterium tuberculosis<\/jats:italic>\n            genotype clusters associated with recent outbreaks in homeless persons to determine factors associated with these tuberculosis (TB) strains. Isolates from all culture-positive TB cases diagnosed from 1 January 2001 to 31 December 2004 were genotyped. Patients whose isolates had identical restriction fragment length polymorphism patterns and spoligotypes were considered clustered. Health department records were reviewed and reinterviews attempted for clustered cases. Patients with the Cs30 and BEs75 strains were compared to other genotypically clustered cases and to each other. The two largest genotype clusters among homeless persons were the Cs30 strain (\n            <jats:italic>n<\/jats:italic>\n            = 105) and the BEs75 strain (\n            <jats:italic>n<\/jats:italic>\n            = 47). Fifty-one (49%) patients with the Cs30 strain and 28 (60%) with the BEs75 strain were homeless. Compared to patients with the BEs75 strain, patients with the Cs30 strain were less likely to be respiratory acid-fast bacillus smear positive (51% versus 72%). Furthermore, patients with the BEs75 strain were more likely to be HIV infected (74% versus 42%), which suggests that most patients with this strain advanced to disease after recent infection. Cases in clusters of strains that have been circulating in the community over a long time period, such as the Cs30 strain, require additional investigation to determine whether clustering is a result of recent transmission or reactivation of remote infection.\n          <\/jats:p>","DOI":"10.1128\/jcm.00160-06","type":"journal-article","created":{"date-parts":[[2006,8,5]],"date-time":"2006-08-05T01:54:18Z","timestamp":1154742858000},"page":"2890-2896","update-policy":"http:\/\/dx.doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":15,"title":["Strain-Specific Differences in Two Large\n            <i>Mycobacterium tuberculosis<\/i>\n            Genotype Clusters in Isolates Collected from Homeless Patients in New York City from 2001 to 2004"],"prefix":"10.1128","volume":"44","author":[{"given":"Michelle","family":"Macaraig","sequence":"first","affiliation":[{"name":"New York City Department of Health and Mental Hygiene, New York, New York"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tracy","family":"Agerton","sequence":"additional","affiliation":[{"name":"New York City Department of Health and Mental Hygiene, New York, New York"},{"name":"Centers for Disease Control and Prevention, Atlanta, Georgia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cynthia R.","family":"Driver","sequence":"additional","affiliation":[{"name":"New York City Department of Health and Mental Hygiene, New York, New York"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sonal S.","family":"Munsiff","sequence":"additional","affiliation":[{"name":"New York City Department of Health and Mental Hygiene, New York, New York"},{"name":"Centers for Disease Control and Prevention, Atlanta, Georgia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jalaa'","family":"Abdelwahab","sequence":"additional","affiliation":[{"name":"Centers for Disease Control and Prevention, Atlanta, Georgia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Julie","family":"Park","sequence":"additional","affiliation":[{"name":"New York City Department of Health and Mental Hygiene, New York, New York"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Barry","family":"Kreiswirth","sequence":"additional","affiliation":[{"name":"Public Health Research Institute, Newark, New Jersey"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jeffrey","family":"Driscoll","sequence":"additional","affiliation":[{"name":"Wadsworth Center, New York State Department of Health, Albany, New York"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Benyang","family":"Zhao","sequence":"additional","affiliation":[{"name":"New York City Department of Health and Mental Hygiene, New York, New York"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"235","reference":[{"key":"e_1_3_1_2_2","doi-asserted-by":"publisher","DOI":"10.1056\/NEJM199406163302403"},{"key":"e_1_3_1_3_2","doi-asserted-by":"publisher","DOI":"10.1001\/jama.1996.03530280057037"},{"key":"e_1_3_1_4_2","doi-asserted-by":"publisher","DOI":"10.1001\/jama.1997.03550140051039"},{"key":"e_1_3_1_5_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(98)03406-0"},{"key":"e_1_3_1_6_2","unstructured":"Centers for Disease Control and Prevention. 2004. Reporting tuberculosis in the United States 2003. Centers for Disease Control and Prevention Atlanta Ga."},{"key":"e_1_3_1_7_2","first-page":"216","volume":"5","year":"2001","unstructured":"Dale, J. W., D. Brittain, A. A. Cataldi, D. Cousins, J. T. Crawford, J. Driscoll, H. Heersma, T. Lillebaek, T. Quitugua, N. Rastogi, R. A. Skuce, C. Sola, D. Van Soolingen, and V. Vincent. 2001. Spacer oligonucleotide typing of bacteria of the Mycobacterium tuberculosis complex: recommendations for standardised nomenclature. Int. J. Tuberc. Lung Dis.5:216-219.","journal-title":"Int. J. Tuberc. Lung Dis."},{"key":"e_1_3_1_8_2","doi-asserted-by":"publisher","DOI":"10.1056\/NEJM199201233260404"},{"key":"e_1_3_1_9_2","doi-asserted-by":"publisher","DOI":"10.1378\/chest.120.6.1877"},{"key":"e_1_3_1_10_2","doi-asserted-by":"publisher","DOI":"10.3201\/eid0811.020174"},{"key":"e_1_3_1_11_2","doi-asserted-by":"publisher","DOI":"10.1086\/514067"},{"key":"e_1_3_1_12_2","doi-asserted-by":"publisher","DOI":"10.1056\/NEJM199603283341304"},{"key":"e_1_3_1_13_2","first-page":"90","volume":"50","year":"1975","unstructured":"Grzybowski, S., G. D. Barnett, and K. Styblo. 1975. Contacts of cases of active pulmonary tuberculosis. Int. J. Tuberc. Lung Dis.50:90-106.","journal-title":"Int. J. Tuberc. Lung Dis."},{"key":"e_1_3_1_14_2","doi-asserted-by":"publisher","DOI":"10.1128\/jcm.35.4.907-914.1997"},{"key":"e_1_3_1_15_2","first-page":"655","volume":"2","year":"1998","unstructured":"Kimerling, M. E., W. H. Benjamin, K. H. Lok, G. Curtis, and N. E. Dunlap. 1998. Restriction fragment length polymorphism screening of Mycobacterium tuberculosis isolates: population surveillance for targeting disease transmission in a community. Int. J. Tuberc. Lung Dis.2:655-662.","journal-title":"Int. J. Tuberc. Lung Dis."},{"key":"e_1_3_1_16_2","doi-asserted-by":"publisher","DOI":"10.1056\/NEJM199507273330404"},{"key":"e_1_3_1_17_2","first-page":"199","year":"1996","unstructured":"Kreiswirth, B. N., and A. Moss. 1996. Genotyping multidrug-resistant Mycobacterium tuberculosis in New York City, p. 199-209. In W. N. Rom and S. M. Garay (ed.), Tuberculosis. Lippincott Williams & Wilkins, Boston, Mass.","journal-title":"Tuberculosis"},{"key":"e_1_3_1_18_2","first-page":"S463","volume":"7","year":"2003","unstructured":"Lambregts-van Weezenbeek, C. S., M. M. Sebek, P. J. van Gerven, G. de Vries, S. Verver, N. A. Kalisvaart, and D. van Soolingen. 2003. Tuberculosis contact investigation and DNA fingerprint surveillance in The Netherlands: 6 years' experience with nation-wide cluster feedback and cluster monitoring. Int. J. Tuberc. Lung Dis.7:S463-S470.","journal-title":"Int. J. Tuberc. Lung Dis."},{"key":"e_1_3_1_19_2","first-page":"390","volume":"2","year":"1998","unstructured":"Lemaitre, N., W. Sougakoff, C. Truffot-Pernot, E. Cambau, J. P. Derenne, F. Bricaire, J. Grosset, and V. Jarlier. 1998. Use of DNA fingerprinting for primary surveillance of nosocomial tuberculosis in a large urban hospital: detection of outbreaks in homeless people and migrant workers. Int. J. Tuberc. Lung Dis.2:390-396.","journal-title":"Int. J. Tuberc. Lung Dis."},{"key":"e_1_3_1_20_2","doi-asserted-by":"publisher","DOI":"10.1164\/ajrccm\/148.1.235"},{"key":"e_1_3_1_21_2","doi-asserted-by":"publisher","DOI":"10.7326\/0003-4819-126-2-199701150-00005"},{"key":"e_1_3_1_22_2","doi-asserted-by":"publisher","DOI":"10.1086\/339345"},{"key":"e_1_3_1_23_2","doi-asserted-by":"publisher","DOI":"10.1086\/374836"},{"key":"e_1_3_1_24_2","first-page":"1252","volume":"8","year":"2002","unstructured":"McElroy, P. D., T. R. Sterling, C. R. Driver, B. Kreiswirth, C. L. Woodley, W. A. Cronin, D. X. Hardge, K. L. Shilkret, and R. Ridzon. 2002. Use of DNA fingerprinting to investigate a multiyear, multistate tuberculosis outbreak. Emerg. Infect. Dis.8:1252-1256.","journal-title":"Emerg. Infect. Dis."},{"key":"e_1_3_1_25_2","doi-asserted-by":"publisher","DOI":"10.3201\/eid0811.020288"},{"key":"e_1_3_1_26_2","doi-asserted-by":"publisher","DOI":"10.1086\/376837"},{"key":"e_1_3_1_27_2","unstructured":"New York City Department of Health and Mental Hygiene. 2004. Tuberculosis in New York City 2003: information summary. New York City Department of Health and Mental Hygiene New York N.Y."},{"key":"e_1_3_1_28_2","doi-asserted-by":"publisher","DOI":"10.7326\/0003-4819-117-3-191"},{"key":"e_1_3_1_29_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0041-3879(76)80006-2"},{"key":"e_1_3_1_30_2","doi-asserted-by":"publisher","DOI":"10.1056\/NEJM198903023200901"},{"key":"e_1_3_1_31_2","first-page":"724","volume":"69","year":"1954","unstructured":"Shaw, J. B., and N. Wynn-Williams. 1954. Infectivity of pulmonary tuberculosis in relation to sputum status. Am. Rev. Tuberc.69:724-732.","journal-title":"Am. Rev. Tuberc."},{"key":"e_1_3_1_32_2","doi-asserted-by":"publisher","DOI":"10.1056\/NEJM199406163302402"},{"key":"e_1_3_1_33_2","first-page":"1066","volume":"4","year":"2000","unstructured":"Sterling, T. R., D. Thompson, R. L. Stanley, P. D. McElroy, A. Madison, K. Moore, R. Ridzon, S. Harrington, W. R. Bishai, R. E. Chaisson, and S. Bur. 2000. A multi-state outbreak of tuberculosis among members of a highly mobile social network: implications for tuberculosis elimination. Int. J. Tuberc. Lung Dis.4:1066-1073.","journal-title":"Int. J. Tuberc. Lung Dis."},{"key":"e_1_3_1_34_2","doi-asserted-by":"publisher","DOI":"10.1001\/archinte.1990.00390210032009"},{"key":"e_1_3_1_35_2","unstructured":"U.S. Congress. 1987. McKinney Act Public Law 100-77 U.S. Statutes at Large 101 (1987): 482 codified at U.S. Code 42 (1987) \u00a7 11301."},{"key":"e_1_3_1_36_2","doi-asserted-by":"publisher","DOI":"10.1128\/jcm.31.2.406-409.1993"}],"container-title":["Journal of Clinical Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/JCM.00160-06","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/JCM.00160-06","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,3,5]],"date-time":"2022-03-05T05:20:56Z","timestamp":1646457656000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/JCM.00160-06"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006,8]]},"references-count":35,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2006,8]]}},"alternative-id":["10.1128\/JCM.00160-06"],"URL":"https:\/\/doi.org\/10.1128\/jcm.00160-06","relation":{},"ISSN":["0095-1137","1098-660X"],"issn-type":[{"value":"0095-1137","type":"print"},{"value":"1098-660X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2006,8]]},"assertion":[{"value":"2006-01-24","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2006-06-14","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2006-08-01","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}