{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,30]],"date-time":"2026-09-30T06:36:26Z","timestamp":1790750186864,"version":"4.1.0"},"reference-count":55,"publisher":"American Society for Microbiology","issue":"9","license":[{"start":{"date-parts":[[2018,9,1]],"date-time":"2018-09-01T00:00:00Z","timestamp":1535760000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["J Clin Microbiol"],"published-print":{"date-parts":[[2018,9]]},"abstract":"<jats:p>\n            A whole-genome sequencing (WGS) approach was conducted in order to identify the molecular determinants associated with antimicrobial resistance in 12 multidrug-resistant\n            <jats:named-content content-type=\"genus-species\">Campylobacter jejuni<\/jats:named-content>\n            and\n            <jats:named-content content-type=\"genus-species\">Campylobacter coli<\/jats:named-content>\n            isolates, with a focus on aminoglycoside resistance determinants. Two variants of a new aminoglycoside phosphotransferase gene [\n            <jats:italic>aph<\/jats:italic>\n            (\n            <jats:italic>2<\/jats:italic>\n            \u2033)-\n            <jats:italic>\n              Ii\n              <jats:sub>1<\/jats:sub>\n            <\/jats:italic>\n            and\n            <jats:italic>aph<\/jats:italic>\n            (\n            <jats:italic>2<\/jats:italic>\n            \u2033)-\n            <jats:italic>\n              Ii\n              <jats:sub>2<\/jats:sub>\n            <\/jats:italic>\n            ] putatively associated with gentamicin resistance were found.\n          <\/jats:p>","DOI":"10.1128\/jcm.00390-18","type":"journal-article","created":{"date-parts":[[2018,7,3]],"date-time":"2018-07-03T10:04:01Z","timestamp":1530612241000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":41,"title":["Whole-Genome Sequence Analysis of Multidrug-Resistant Campylobacter Isolates: a Focus on Aminoglycoside Resistance Determinants"],"prefix":"10.1128","volume":"56","author":[{"given":"Adrien","family":"Fabre","sequence":"first","affiliation":[{"name":"CHU de Bordeaux, National Reference Center for Campylobacter and Helicobacter, Bordeaux, France"},{"name":"INSERM, University of Bordeaux, UMR1053 Bordeaux Research in Translational Oncology, BaRITOn, Bordeaux, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6360-2576","authenticated-orcid":false,"given":"Monica","family":"Oleastro","sequence":"additional","affiliation":[{"name":"National Reference Laboratory of Gastrointestinal Infections, Department of Infectious Diseases, National Institute of Health, Lisbon, Portugal"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alexandra","family":"Nunes","sequence":"additional","affiliation":[{"name":"Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health, Lisbon, Portugal"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andrea","family":"Santos","sequence":"additional","affiliation":[{"name":"National Reference Laboratory of Gastrointestinal Infections, Department of Infectious Diseases, National Institute of Health, Lisbon, Portugal"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Elodie","family":"Sifr\u00e9","sequence":"additional","affiliation":[{"name":"CHU de Bordeaux, National Reference Center for Campylobacter and Helicobacter, Bordeaux, France"},{"name":"INSERM, University of Bordeaux, UMR1053 Bordeaux Research in Translational Oncology, BaRITOn, Bordeaux, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Astrid","family":"Ducournau","sequence":"additional","affiliation":[{"name":"CHU de Bordeaux, National Reference Center for Campylobacter and Helicobacter, Bordeaux, France"},{"name":"INSERM, University of Bordeaux, UMR1053 Bordeaux Research in Translational Oncology, BaRITOn, Bordeaux, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lucie","family":"B\u00e9n\u00e9jat","sequence":"additional","affiliation":[{"name":"CHU de Bordeaux, National Reference Center for Campylobacter and Helicobacter, Bordeaux, France"},{"name":"INSERM, University of Bordeaux, UMR1053 Bordeaux Research in Translational Oncology, BaRITOn, Bordeaux, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alice","family":"Buissonni\u00e8re","sequence":"additional","affiliation":[{"name":"CHU de Bordeaux, National Reference Center for Campylobacter and Helicobacter, Bordeaux, France"},{"name":"INSERM, University of Bordeaux, UMR1053 Bordeaux Research in Translational Oncology, BaRITOn, Bordeaux, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pauline","family":"Floch","sequence":"additional","affiliation":[{"name":"CHU de Bordeaux, National Reference Center for Campylobacter and Helicobacter, Bordeaux, France"},{"name":"INSERM, University of Bordeaux, UMR1053 Bordeaux Research in Translational Oncology, BaRITOn, Bordeaux, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Francis","family":"M\u00e9graud","sequence":"additional","affiliation":[{"name":"CHU de Bordeaux, National Reference Center for Campylobacter and Helicobacter, Bordeaux, France"},{"name":"INSERM, University of Bordeaux, UMR1053 Bordeaux Research in Translational Oncology, BaRITOn, Bordeaux, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"V\u00e9ronique","family":"Dubois","sequence":"additional","affiliation":[{"name":"CNRS UMR5234, University of Bordeaux, Bordeaux, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Philippe","family":"Lehours","sequence":"additional","affiliation":[{"name":"CHU de Bordeaux, National Reference Center for Campylobacter and Helicobacter, Bordeaux, France"},{"name":"INSERM, University of Bordeaux, UMR1053 Bordeaux Research in Translational Oncology, BaRITOn, Bordeaux, France"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_3_2_2","volume-title":"The global view of campylobacteriosis: report of an expert consultation, Utrecht, Netherlands, 9\u201311 July 2012","author":"World Health Organization","year":"2013","unstructured":"World Health Organization. 2013. The global view of campylobacteriosis: report of an expert consultation, Utrecht, Netherlands, 9\u201311 July 2012. WHO, Geneva, Switzerland."},{"key":"e_1_3_3_3_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1469-0691.2004.00983.x"},{"key":"e_1_3_3_4_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.38.9.1879"},{"key":"e_1_3_3_5_2","doi-asserted-by":"publisher","DOI":"10.1086\/591530"},{"key":"e_1_3_3_6_2","volume-title":"Bilan de la surveillance des infections \u00e0 Campylobacter chez l'homme en France en 2015","author":"Van Cauteren D","year":"2016","unstructured":"Van Cauteren D, Lehours P, Bess\u00e8de E, De Valk H, M\u00e9graud F. 2016. Bilan de la surveillance des infections \u00e0 Campylobacter chez l'homme en France en 2015. Institut de Veille Sanitaire, D\u00e9partement des Maladies Infectieuses, Saint-Maurice, France."},{"key":"e_1_3_3_7_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijantimicag.2014.06.012"},{"key":"e_1_3_3_8_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.mimet.2013.06.021"},{"key":"e_1_3_3_9_2","doi-asserted-by":"publisher","DOI":"10.2903\/j.efsa.2018.5182"},{"key":"e_1_3_3_10_2","doi-asserted-by":"publisher","DOI":"10.7860\/JCDR\/2013\/5267.2738"},{"key":"e_1_3_3_11_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijfoodmicro.2014.04.023"},{"key":"e_1_3_3_12_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.vetmic.2009.12.035"},{"key":"e_1_3_3_13_2","doi-asserted-by":"publisher","DOI":"10.1155\/2013\/340605"},{"key":"e_1_3_3_14_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.micinf.2005.12.032"},{"key":"e_1_3_3_15_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkt515"},{"key":"e_1_3_3_16_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dki040"},{"key":"e_1_3_3_17_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkv001"},{"key":"e_1_3_3_18_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00669-13"},{"key":"e_1_3_3_19_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00304-10"},{"key":"e_1_3_3_20_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.02049-12"},{"key":"e_1_3_3_21_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00112-17"},{"key":"e_1_3_3_22_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.drup.2010.08.003"},{"key":"e_1_3_3_23_2","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.16.3.430-450.2003"},{"key":"e_1_3_3_24_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.49.6.2454-2459.2005"},{"key":"e_1_3_3_25_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.02873-15"},{"key":"e_1_3_3_26_2","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M808148200"},{"key":"e_1_3_3_27_2","doi-asserted-by":"publisher","DOI":"10.1128\/jb.167.2.631-638.1986"},{"key":"e_1_3_3_28_2","doi-asserted-by":"publisher","DOI":"10.1099\/00221287-133-11-3039"},{"key":"e_1_3_3_29_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.mimet.2015.10.018"},{"key":"e_1_3_3_30_2","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2012.0021"},{"key":"e_1_3_3_31_2","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msw054"},{"key":"e_1_3_3_32_2","first-page":"406","article-title":"The neighbor-joining method: a new method for reconstructing phylogenetic trees","volume":"4","author":"Saitou N","year":"1987","unstructured":"Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406\u2013425.","journal-title":"Mol Biol Evol"},{"key":"e_1_3_3_33_2","doi-asserted-by":"publisher","DOI":"10.1021\/acs.biochem.5b01269"},{"key":"e_1_3_3_34_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01124-10"},{"key":"e_1_3_3_35_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1469-0691.2012.03842.x"},{"key":"e_1_3_3_36_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dks235"},{"key":"e_1_3_3_37_2","doi-asserted-by":"publisher","DOI":"10.1016\/0378-1119(83)90022-7"},{"key":"e_1_3_3_38_2","doi-asserted-by":"publisher","DOI":"10.1006\/plas.1996.0020"},{"key":"e_1_3_3_39_2","doi-asserted-by":"publisher","DOI":"10.1006\/plas.2001.1544"},{"key":"e_1_3_3_40_2","doi-asserted-by":"publisher","DOI":"10.1099\/mic.0.000304"},{"key":"e_1_3_3_41_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkt081"},{"key":"e_1_3_3_42_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkt015"},{"key":"e_1_3_3_43_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dks320"},{"key":"e_1_3_3_44_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.37.3.457"},{"key":"e_1_3_3_45_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-695X.2006.00197.x"},{"key":"e_1_3_3_46_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.03039-14"},{"key":"e_1_3_3_47_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.49.7.2716-2719.2005"},{"key":"e_1_3_3_48_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01126-07"},{"key":"e_1_3_3_49_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2013.00186"},{"key":"e_1_3_3_50_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00229-07"},{"key":"e_1_3_3_51_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01775-12"},{"key":"e_1_3_3_52_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.44.5.1365-1366.2000"},{"key":"e_1_3_3_53_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00775-10"},{"key":"e_1_3_3_54_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00284-002-3684-y"},{"key":"e_1_3_3_55_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/14.4.1565"},{"key":"e_1_3_3_56_2","doi-asserted-by":"publisher","DOI":"10.1016\/0378-1119(83)90223-8"}],"container-title":["Journal of Clinical Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/JCM.00390-18","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/JCM.00390-18","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,3,5]],"date-time":"2022-03-05T10:22:59Z","timestamp":1646475779000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/JCM.00390-18"}},"subtitle":[],"editor":[{"given":"Alexander","family":"Mellmann","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2018,9]]},"references-count":55,"journal-issue":{"issue":"9","published-print":{"date-parts":[[2018,9]]}},"alternative-id":["10.1128\/JCM.00390-18"],"URL":"https:\/\/doi.org\/10.1128\/jcm.00390-18","relation":{},"ISSN":["0095-1137","1098-660X"],"issn-type":[{"value":"0095-1137","type":"print"},{"value":"1098-660X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,9]]},"assertion":[{"value":"2018-03-07","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2018-06-28","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2018-08-27","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e00390-18"}}