{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,6]],"date-time":"2026-11-06T17:28:45Z","timestamp":1793986125839,"version":"4.8.0"},"reference-count":36,"publisher":"American Society for Microbiology","issue":"11","license":[{"start":{"date-parts":[[2018,11,1]],"date-time":"2018-11-01T00:00:00Z","timestamp":1541030400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"funder":[{"DOI":"10.13039\/501100000272","name":"DH | National Institute for Health Research","doi-asserted-by":"publisher","award":["109524"],"award-info":[{"award-number":["109524"]}],"id":[{"id":"10.13039\/501100000272","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["J Clin Microbiol"],"published-print":{"date-parts":[[2018,11]]},"abstract":"<jats:p>\n                    Epidemiological and microbiological data on\n                    <jats:named-content content-type=\"genus-species\">Vibrio cholerae<\/jats:named-content>\n                    strains isolated between April 2004 and March 2018 (\n                    <jats:italic>n<\/jats:italic>\n                    = 836) and held at the Public Health England culture archive were reviewed. The traditional biochemical species identification and serological typing results were compared with the genome-derived species identification and serotype for a subset of isolates (\n                    <jats:italic>n<\/jats:italic>\n                    = 152).\n                  <\/jats:p>","DOI":"10.1128\/jcm.00831-18","type":"journal-article","created":{"date-parts":[[2018,8,20]],"date-time":"2018-08-20T04:16:18Z","timestamp":1534738578000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":34,"title":["Evaluation of Whole-Genome Sequencing for Identification and Typing of Vibrio cholerae"],"prefix":"10.1128","volume":"56","author":[{"given":"David R.","family":"Greig","sequence":"first","affiliation":[{"name":"National Infection Services, Public Health England, London, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ulf","family":"Schaefer","sequence":"additional","affiliation":[{"name":"National Infection Services, Public Health England, London, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sophie","family":"Octavia","sequence":"additional","affiliation":[{"name":"National Public Health Laboratory, Ministry of Health, Singapore, Singapore"},{"name":"School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ebony","family":"Hunter","sequence":"additional","affiliation":[{"name":"National Infection Services, Public Health England, London, United Kingdom"},{"name":"School of Pharmacy &amp; Biomolecular Sciences, University of Brighton, Sussex, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marie A.","family":"Chattaway","sequence":"additional","affiliation":[{"name":"National Infection Services, Public Health England, London, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Timothy J.","family":"Dallman","sequence":"additional","affiliation":[{"name":"National Infection Services, Public Health England, London, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Claire","family":"Jenkins","sequence":"additional","affiliation":[{"name":"National Infection Services, Public Health England, London, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_3_2_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(12)60436-X"},{"key":"e_1_3_3_3_2","doi-asserted-by":"publisher","DOI":"10.1007\/s40572-017-0132-5"},{"key":"e_1_3_3_4_2","first-page":"106","article-title":"Emergence, ecology and dispersal of the pandemic generating Vibrio cholerae lineage","volume":"20","author":"Islam MT","year":"2017","unstructured":"Islam MT, Alam M, Boucher Y. 2017. Emergence, ecology and dispersal of the pandemic generating Vibrio cholerae lineage. Int Microbiol 20:106\u2013115.","journal-title":"Int Microbiol"},{"key":"e_1_3_3_5_2","doi-asserted-by":"publisher","DOI":"10.1017\/S0950268816001783"},{"key":"e_1_3_3_6_2","doi-asserted-by":"publisher","DOI":"10.1038\/nature10392"},{"key":"e_1_3_3_7_2","first-page":"14","article-title":"Epidemiology & molecular biology of Vibrio cholerae O139 Bengal","volume":"104","author":"Albert MJ","year":"1996","unstructured":"Albert MJ. 1996. Epidemiology & molecular biology of Vibrio cholerae O139 Bengal. Indian J Med Res 104:14\u201327.","journal-title":"Indian J Med Res"},{"key":"e_1_3_3_8_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(17)30559-7"},{"key":"e_1_3_3_9_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.aao2136"},{"key":"e_1_3_3_10_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.aad5901"},{"key":"e_1_3_3_11_2","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/civ318"},{"key":"e_1_3_3_12_2","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.1752"},{"key":"e_1_3_3_13_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2017.01700"},{"key":"e_1_3_3_14_2","volume-title":"Bergey's manual of systematic bacteriology","author":"Bergey DH","year":"1984","unstructured":"Bergey DH, Krieg NR, Holt JG. 1984. Bergey's manual of systematic bacteriology. Williams & Wilkins, Baltimore, MD."},{"key":"e_1_3_3_15_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu170"},{"key":"e_1_3_3_16_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.01790-16"},{"key":"e_1_3_3_17_2","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.2308"},{"key":"e_1_3_3_18_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp698"},{"key":"e_1_3_3_19_2","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2012.0021"},{"key":"e_1_3_3_20_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.107524.110"},{"key":"e_1_3_3_21_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu033"},{"key":"e_1_3_3_22_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty212"},{"key":"e_1_3_3_23_2","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.1923"},{"key":"e_1_3_3_24_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.diagmicrobio.2017.11.017"},{"key":"e_1_3_3_25_2","first-page":"17","article-title":"Cholera outbreaks in the El Tor biotype era and the impact of the new El Tor variants","volume":"379","author":"Mukhopadhyay AK","year":"2014","unstructured":"Mukhopadhyay AK, Takeda Y, Balakrish Nair G. 2014. Cholera outbreaks in the El Tor biotype era and the impact of the new El Tor variants. Curr Top Microbiol Immunol 379:17\u201347.","journal-title":"Curr Top Microbiol Immunol"},{"key":"e_1_3_3_26_2","first-page":"1","article-title":"Cholera outbreaks in the classical biotype era","volume":"379","author":"Siddique AK","year":"2014","unstructured":"Siddique AK, Cash R. 2014. Cholera outbreaks in the classical biotype era. Curr Top Microbiol Immunol 379:1\u201316.","journal-title":"Curr Top Microbiol Immunol"},{"key":"e_1_3_3_27_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2016.01250"},{"key":"e_1_3_3_28_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13099-017-0210-0"},{"key":"e_1_3_3_29_2","first-page":"49","article-title":"Cholera outbreaks in India","volume":"379","author":"Ramamurthy T","year":"2014","unstructured":"Ramamurthy T, Sharma NC. 2014. Cholera outbreaks in India. Curr Top Microbiol Immunol 379:49\u201385.","journal-title":"Curr Top Microbiol Immunol"},{"key":"e_1_3_3_30_2","doi-asserted-by":"publisher","DOI":"10.3201\/.eid2001.130428"},{"key":"e_1_3_3_31_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.41.5.2191-2196.2003"},{"key":"e_1_3_3_32_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2180-12-82"},{"key":"e_1_3_3_33_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0065342"},{"key":"e_1_3_3_34_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0169324"},{"key":"e_1_3_3_35_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jinf.2016.02.005"},{"key":"e_1_3_3_36_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12941-017-0185-1"},{"key":"e_1_3_3_37_2","first-page":"220","article-title":"Cholera\u2014recommendations for prevention in travellers","volume":"39","author":"Neilson AA","year":"2010","unstructured":"Neilson AA, Mayer CA. 2010. Cholera\u2014recommendations for prevention in travellers. Aust Fam Physician 39:220\u2013226.","journal-title":"Aust Fam Physician"}],"container-title":["Journal of Clinical Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/JCM.00831-18","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/JCM.00831-18","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,3,5]],"date-time":"2022-03-05T03:57:35Z","timestamp":1646452655000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/JCM.00831-18"}},"subtitle":[],"editor":[{"given":"Alexander","family":"Mellmann","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2018,11]]},"references-count":36,"journal-issue":{"issue":"11","published-print":{"date-parts":[[2018,11]]}},"alternative-id":["10.1128\/JCM.00831-18"],"URL":"https:\/\/doi.org\/10.1128\/jcm.00831-18","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/327973","asserted-by":"object"}]},"ISSN":["0095-1137","1098-660X"],"issn-type":[{"value":"0095-1137","type":"print"},{"value":"1098-660X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,11]]},"assertion":[{"value":"2018-05-21","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2018-08-13","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2018-10-25","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e00831-18"}}