{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T18:26:37Z","timestamp":1790619997591,"version":"4.1.0"},"reference-count":59,"publisher":"American Society for Microbiology","issue":"1","license":[{"start":{"date-parts":[[2011,1,1]],"date-time":"2011-01-01T00:00:00Z","timestamp":1293840000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["J Clin Microbiol"],"published-print":{"date-parts":[[2011,1]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n          <jats:p>\n            To identify loci useful for species identification and to enhance our understanding of the population structure and genetic variability of the genus\n            <jats:italic>Mycobacterium<\/jats:italic>\n            , we conducted a multiple-genome comparison of a total of 27 sequenced genomes in the suborder of\n            <jats:italic>Corynebacterineae<\/jats:italic>\n            (18 from the\n            <jats:italic>Mycobacterium<\/jats:italic>\n            genus, 7 from the\n            <jats:italic>Corynebacterium<\/jats:italic>\n            genus, 1 each from the\n            <jats:italic>Nocardia<\/jats:italic>\n            and\n            <jats:italic>Rhodococcus<\/jats:italic>\n            genera). Our study revealed 26 informative loci for species identification in\n            <jats:italic>Mycobacterium<\/jats:italic>\n            . The sequences from these loci were used in a phylogenetic analysis to infer the evolutionary relations of the 18 mycobacterial genomes. Among the loci that we identified,\n            <jats:italic>rpoBC<\/jats:italic>\n            ,\n            <jats:italic>dnaK<\/jats:italic>\n            , and\n            <jats:italic>hsp65<\/jats:italic>\n            were amplified from 29 ATCC reference strains and 17 clinical isolates and sequenced. The phylogenetic trees generated from these loci show similar topologies. The newly identified\n            <jats:italic>dnaK<\/jats:italic>\n            locus is more discriminatory and more robust than the widely used\n            <jats:italic>hsp65<\/jats:italic>\n            locus. The length-variable\n            <jats:italic>rpoBC<\/jats:italic>\n            locus is the first intergenic locus between two protein-encoding genes being used for mycobacterial species identification. A multilocus sequence analysis system including the\n            <jats:italic>rpoBC<\/jats:italic>\n            ,\n            <jats:italic>dnaK<\/jats:italic>\n            , and\n            <jats:italic>hsp65<\/jats:italic>\n            loci is a robust tool for accurate identification of\n            <jats:italic>Mycobacterium<\/jats:italic>\n            species.\n          <\/jats:p>","DOI":"10.1128\/jcm.00957-10","type":"journal-article","created":{"date-parts":[[2010,11,4]],"date-time":"2010-11-04T02:27:09Z","timestamp":1288837629000},"page":"144-153","update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":36,"title":["Multiple-Genome Comparison Reveals New Loci for\n            <i>Mycobacterium<\/i>\n            Species Identification"],"prefix":"10.1128","volume":"49","author":[{"given":"Jianli","family":"Dai","sequence":"first","affiliation":[{"name":"Emerging Pathogens Institute, University of Florida, Gainesville, Florida 32611"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuansha","family":"Chen","sequence":"additional","affiliation":[{"name":"Emerging Pathogens Institute, University of Florida, Gainesville, Florida 32611"},{"name":"Department of Pathology, Immunology, and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, Florida 32610"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Susan","family":"Dean","sequence":"additional","affiliation":[{"name":"Florida Department of Health\u2014Bureau of Laboratories, Jacksonville, Florida 32202"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J. Glenn","family":"Morris","sequence":"additional","affiliation":[{"name":"Emerging Pathogens Institute, University of Florida, Gainesville, Florida 32611"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Max","family":"Salfinger","sequence":"additional","affiliation":[{"name":"Florida Department of Health\u2014Bureau of Laboratories, Tallahassee, Florida 32399"},{"name":"Division of Pulmonary, Critical Care &amp; Sleep Medicine, College of Medicine, University of Florida, Gainesville, Florida 32611"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Judith A.","family":"Johnson","sequence":"additional","affiliation":[{"name":"Emerging Pathogens Institute, University of Florida, Gainesville, Florida 32611"},{"name":"Department of Pathology, Immunology, and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, Florida 32610"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_3_2_2","doi-asserted-by":"crossref","unstructured":"Becq J. 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