{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,27]],"date-time":"2025-09-27T21:49:58Z","timestamp":1759009798815},"reference-count":32,"publisher":"American Society for Microbiology","issue":"10","license":[{"start":{"date-parts":[[2014,10,1]],"date-time":"2014-10-01T00:00:00Z","timestamp":1412121600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["J Clin Microbiol"],"published-print":{"date-parts":[[2014,10]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n          <jats:p>\n            Using crude whole-genome assemblies, we analyzed 25 isolates of\n            <jats:named-content content-type=\"genus-species\">Neisseria gonorrhoeae<\/jats:named-content>\n            by using a high-resolution single nucleotide polymorphism (SNP) approach for nine housekeeping genes, characterizing\n            <jats:italic>penA<\/jats:italic>\n            alleles, and antimicrobial susceptibility phenotypes coupled with population structure analysis. Two clonal complexes, characterized by their spatial and geographical persistence, were identified. In addition, the clonal spread of penicillin-resistant\/intermediate phenotypes and a novel introduction of the azithromycin resistance phenotype in Saskatchewan, Canada, were ascertained using this method.\n          <\/jats:p>","DOI":"10.1128\/jcm.01502-14","type":"journal-article","created":{"date-parts":[[2014,7,24]],"date-time":"2014-07-24T06:29:19Z","timestamp":1406183359000},"page":"3772-3776","update-policy":"http:\/\/dx.doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":18,"title":["Using Crude Whole-Genome Assemblies of Neisseria gonorrhoeae as a Platform for Strain Analysis: Clonal Spread of Gonorrhea Infection in Saskatchewan, Canada"],"prefix":"10.1128","volume":"52","author":[{"given":"Sinisa","family":"Vidovic","sequence":"first","affiliation":[{"name":"Department of Food and Bioproducts Sciences, College of Agriculture, University of Saskatchewan, Saskatoon, Canada"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Carolyn","family":"Caron","sequence":"additional","affiliation":[{"name":"Department of Computer Science, College of Arts and Science, University of Saskatchewan, Saskatoon, Canada"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ali","family":"Taheri","sequence":"additional","affiliation":[{"name":"Vaccine and Infectious Disease Organization, International Vaccine Centre, University of Saskatchewan, Saskatoon, Canada"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sidharath D.","family":"Thakur","sequence":"additional","affiliation":[{"name":"Department of Microbiology and Immunology, College of Medicine, University of Saskatchewan, Saskatoon, Canada"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Timothy D.","family":"Read","sequence":"additional","affiliation":[{"name":"Department of Medicine, Division of Infectious Diseases, Emory University School of Medicine, Atlanta, Georgia, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anthony","family":"Kusalik","sequence":"additional","affiliation":[{"name":"Department of Computer Science, College of Arts and Science, University of Saskatchewan, Saskatoon, Canada"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jo-Anne R.","family":"Dillon","sequence":"additional","affiliation":[{"name":"Vaccine and Infectious Disease Organization, International Vaccine Centre, University of Saskatchewan, Saskatoon, Canada"},{"name":"Department of Microbiology and Immunology, College of Medicine, University of Saskatchewan, Saskatoon, Canada"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"235","reference":[{"key":"e_1_3_3_2_2","volume-title":"Global action plan to control the spread and impact of antimicrobial resistance in Neisseria gonorrhoeae","author":"World Health Organization","year":"2012","unstructured":"World Health Organization. 2012. Global action plan to control the spread and impact of antimicrobial resistance in Neisseria gonorrhoeae. World Health Organization, Geneva, Switzerland."},{"key":"e_1_3_3_3_2","volume-title":"National surveillance of antimicrobial susceptibilities of Neisseria gonorrhoeae annual summary 2012","author":"Public Health Agency of Canada","year":"2014","unstructured":"Public Health Agency of Canada. 2014. National surveillance of antimicrobial susceptibilities of Neisseria gonorrhoeae annual summary 2012. Public Health Agency of Canada, Winnipeg, Canada."},{"key":"e_1_3_3_4_2","doi-asserted-by":"publisher","DOI":"10.1586\/14787210.4.4.619"},{"key":"e_1_3_3_5_2","doi-asserted-by":"publisher","DOI":"10.1097\/OLQ.0b013e31822c664f"},{"key":"e_1_3_3_6_2","doi-asserted-by":"publisher","DOI":"10.1056\/NEJMp1112456"},{"key":"e_1_3_3_7_2","doi-asserted-by":"publisher","DOI":"10.1097\/OLQ.0b013e3182401b69"},{"key":"e_1_3_3_8_2","doi-asserted-by":"publisher","DOI":"10.3201\/eid1701.100397"},{"key":"e_1_3_3_9_2","doi-asserted-by":"publisher","DOI":"10.2807\/ese.16.43.19998-en"},{"key":"e_1_3_3_10_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.05760-11"},{"key":"e_1_3_3_11_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkt034"},{"key":"e_1_3_3_12_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.01402-12"},{"key":"e_1_3_3_13_2","doi-asserted-by":"publisher","DOI":"10.1093\/infdis\/153.6.1162"},{"key":"e_1_3_3_14_2","doi-asserted-by":"publisher","DOI":"10.1097\/OLQ.0b013e3181f0bdbd"},{"key":"e_1_3_3_15_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/16.7.573"},{"key":"e_1_3_3_16_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0028259"},{"key":"e_1_3_3_17_2","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msm092"},{"key":"e_1_3_3_18_2","first-page":"945","article-title":"A simple method for estimating and testing minimum evolution trees","volume":"9","author":"Rzhetsky A","year":"1992","unstructured":"RzhetskyANeiM. 1992. A simple method for estimating and testing minimum evolution trees. Mol. Biol. Evol. 9:945\u2013967.","journal-title":"Mol. Biol. Evol."},{"key":"e_1_3_3_19_2","first-page":"406","article-title":"The neighbor-joining method: a new method for reconstructing phylogenetic trees","volume":"4","author":"Saitou N","year":"1987","unstructured":"SaitouNNeiM. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406\u2013425.","journal-title":"Mol. Biol. Evol."},{"key":"e_1_3_3_20_2","volume-title":"Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically","author":"Clinical and Laboratory Standards Institute","year":"2006","unstructured":"Clinical and Laboratory Standards Institute. 2006. Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically, 7th ed, approved document M7-A7. Clinical and Laboratory Standards Institute, Wayne, PA.","edition":"7"},{"key":"e_1_3_3_21_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkt543"},{"key":"e_1_3_3_22_2","doi-asserted-by":"publisher","DOI":"10.1093\/genetics\/155.2.945"},{"key":"e_1_3_3_23_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btm233"},{"key":"e_1_3_3_24_2","doi-asserted-by":"publisher","DOI":"10.1046\/j.1471-8286.2003.00566.x"},{"key":"e_1_3_3_25_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00306-07"},{"key":"e_1_3_3_26_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00325-11"},{"key":"e_1_3_3_27_2","volume-title":"Report on sexually transmitted infections in Canada: 2009","author":"Public Health Agency of Canada","year":"2011","unstructured":"Public Health Agency of Canada. 2011. Report on sexually transmitted infections in Canada: 2009. Centre for Communicable Diseases and Infection Control, Infectious Disease Prevention and Control Branch, Public Health Agency of Canada, Ottawa, Canada. http:\/\/www.catie.ca\/sites\/default\/files\/2009%20Report%20on%20STI%20in%20Canada_EN.pdf."},{"key":"e_1_3_3_28_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.00565-10"},{"key":"e_1_3_3_29_2","doi-asserted-by":"publisher","DOI":"10.1097\/00007435-200101000-00005"},{"key":"e_1_3_3_30_2","doi-asserted-by":"publisher","DOI":"10.1086\/427661"},{"key":"e_1_3_3_31_2","doi-asserted-by":"publisher","DOI":"10.1097\/OLQ.0b013e318206c288"},{"key":"e_1_3_3_32_2","doi-asserted-by":"publisher","DOI":"10.1136\/sti.2010.044586"},{"key":"e_1_3_3_33_2","doi-asserted-by":"publisher","DOI":"10.1258\/ijsa.2011.011267"}],"container-title":["Journal of Clinical Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/JCM.01502-14","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/JCM.01502-14","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,3,5]],"date-time":"2022-03-05T11:44:23Z","timestamp":1646480663000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/JCM.01502-14"}},"subtitle":[],"editor":[{"given":"E.","family":"Munson","sequence":"additional","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2014,10]]},"references-count":32,"journal-issue":{"issue":"10","published-print":{"date-parts":[[2014,10]]}},"alternative-id":["10.1128\/JCM.01502-14"],"URL":"https:\/\/doi.org\/10.1128\/jcm.01502-14","relation":{},"ISSN":["0095-1137","1098-660X"],"issn-type":[{"value":"0095-1137","type":"print"},{"value":"1098-660X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,10]]},"assertion":[{"value":"2014-05-27","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2014-07-10","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2014-09-16","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}