{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,23]],"date-time":"2026-10-23T23:39:48Z","timestamp":1792798788596,"version":"4.5.0"},"reference-count":38,"publisher":"American Society for Microbiology","issue":"5","license":[{"start":{"date-parts":[[2020,4,23]],"date-time":"2020-04-23T00:00:00Z","timestamp":1587600000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"funder":[{"name":"Australian Government Research Training Program","id":[{"id":"https:\/\/ror.org\/0314h5y94","id-type":"ROR","asserted-by":"crossref"}]},{"name":"Queensland Genomics Health Alliance"},{"DOI":"10.13039\/501100000925","name":"Department of Health | National Health and Medical Research Council","doi-asserted-by":"publisher","award":["1157530"],"award-info":[{"award-number":["1157530"]}],"id":[{"id":"10.13039\/501100000925","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["J Clin Microbiol"],"published-print":{"date-parts":[[2020,4,23]]},"abstract":"<jats:p>\n                    <jats:italic>Klebsiella<\/jats:italic>\n                    species are problematic pathogens in neonatal units and may cause outbreaks, for which the sources of transmission may be challenging to elucidate. We describe the use of whole-genome sequencing (WGS) to investigate environmental sources of transmission during an outbreak of extended-spectrum-\u03b2-lactamase (ESBL)-producing\n                    <jats:named-content content-type=\"genus-species\">Klebsiella michiganensis<\/jats:named-content>\n                    colonizing neonates. Ceftriaxone-resistant\n                    <jats:italic>Klebsiella<\/jats:italic>\n                    spp. isolated from neonates (or their mothers) and the hospital environment were included.\n                  <\/jats:p>","DOI":"10.1128\/jcm.01980-19","type":"journal-article","created":{"date-parts":[[2020,2,25]],"date-time":"2020-02-25T07:58:59Z","timestamp":1582617539000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":56,"title":["Genomic Investigation Reveals Contaminated Detergent as the Source of an Extended-Spectrum-\u03b2-Lactamase-Producing Klebsiella michiganensis Outbreak in a Neonatal Unit"],"prefix":"10.1128","volume":"58","author":[{"given":"Paul","family":"Chapman","sequence":"first","affiliation":[{"name":"Infectious Diseases Unit, Royal Brisbane and Women\u2019s Hospital, Herston, QLD, Australia"},{"name":"Infection Prevention and Control, Caboolture Hospital, Caboolture, QLD, Australia"},{"name":"Queensland Institute of Medical Research Berghofer, Herston, QLD, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2264-4785","authenticated-orcid":false,"given":"Brian M.","family":"Forde","sequence":"additional","affiliation":[{"name":"School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Leah W.","family":"Roberts","sequence":"additional","affiliation":[{"name":"School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Haakon","family":"Bergh","sequence":"additional","affiliation":[{"name":"Microbiology Department, Central Laboratory, Pathology Queensland, Royal Brisbane and Women\u2019s Hospital, Herston, QLD, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Debra","family":"Vesey","sequence":"additional","affiliation":[{"name":"Infection Prevention and Control, Caboolture Hospital, Caboolture, QLD, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5599-7480","authenticated-orcid":false,"given":"Amy V.","family":"Jennison","sequence":"additional","affiliation":[{"name":"Public Health Microbiology, Forensic, and Scientific Services, Queensland Health, Brisbane, QLD, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Susan","family":"Moss","sequence":"additional","affiliation":[{"name":"Public Health Microbiology, Forensic, and Scientific Services, Queensland Health, Brisbane, QLD, Australia"},{"name":"University of Queensland Centre for Clinical Research, Royal Brisbane and Women\u2019s Hospital, Herston, QLD, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David L.","family":"Paterson","sequence":"additional","affiliation":[{"name":"Infectious Diseases Unit, Royal Brisbane and Women\u2019s Hospital, Herston, QLD, Australia"},{"name":"University of Queensland Centre for Clinical Research, Royal Brisbane and Women\u2019s Hospital, Herston, QLD, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1806-3283","authenticated-orcid":false,"given":"Scott A.","family":"Beatson","sequence":"additional","affiliation":[{"name":"School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2895-0345","authenticated-orcid":false,"given":"Patrick N. A.","family":"Harris","sequence":"additional","affiliation":[{"name":"Microbiology Department, Central Laboratory, Pathology Queensland, Royal Brisbane and Women\u2019s Hospital, Herston, QLD, Australia"},{"name":"University of Queensland Centre for Clinical Research, Royal Brisbane and Women\u2019s Hospital, Herston, QLD, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_3_2_2","doi-asserted-by":"publisher","DOI":"10.1136\/archdischild-2015-308707"},{"key":"e_1_3_3_3_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00284-012-0245-x"},{"key":"e_1_3_3_4_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkx415"},{"key":"e_1_3_3_5_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-018-28085-7"},{"key":"e_1_3_3_6_2","doi-asserted-by":"publisher","DOI":"10.7196\/SAMJ.2018.v109i1.13696"},{"key":"e_1_3_3_7_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.nmni.2019.100516"},{"key":"e_1_3_3_8_2","doi-asserted-by":"publisher","DOI":"10.3201\/eid1808.111268"},{"key":"e_1_3_3_9_2","first-page":"266","article-title":"Klebsiella oxytoca outbreak in an intensive care unit: a probable link to common insulin vial use","volume":"41","author":"Mete B","year":"2013","unstructured":"Mete B, Aybar Bilir Y, Aygun G, Yilmaz M, Urkmez S, Dilmen Y, Ozturk R. 2013. Klebsiella oxytoca outbreak in an intensive care unit: a probable link to common insulin vial use. Anaesth Intensive Care 41:266\u2013268.","journal-title":"Anaesth Intensive Care"},{"key":"e_1_3_3_10_2","doi-asserted-by":"publisher","DOI":"10.1111\/1469-0691.12288"},{"key":"e_1_3_3_11_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.04306-14"},{"key":"e_1_3_3_12_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01435-19"},{"key":"e_1_3_3_13_2","doi-asserted-by":"publisher","DOI":"10.1128\/aac.33.1.63"},{"key":"e_1_3_3_14_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.49.8.3453-3462.2005"},{"key":"e_1_3_3_15_2","doi-asserted-by":"publisher","DOI":"10.1042\/bj2430561"},{"key":"e_1_3_3_16_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.40.2.460"},{"key":"e_1_3_3_17_2","doi-asserted-by":"publisher","DOI":"10.1053\/jhin.2001.1018"},{"key":"e_1_3_3_18_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.00194-08"},{"key":"e_1_3_3_19_2","first-page":"469","article-title":"Cephalosporin resistance in strains of Klebsiella oxytoca isolated during antibiotic therapy","volume":"254","author":"Then RL","year":"1983","unstructured":"Then RL, Glauser MP, Angehrn P, Arisawa M. 1983. Cephalosporin resistance in strains of Klebsiella oxytoca isolated during antibiotic therapy. Zentralbl Bakteriol Mikrobiol Hyg A 254:469\u2013479.","journal-title":"Zentralbl Bakteriol Mikrobiol Hyg A"},{"key":"e_1_3_3_20_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkh112"},{"key":"e_1_3_3_21_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01009-09"},{"key":"e_1_3_3_22_2","doi-asserted-by":"publisher","DOI":"10.1016\/0195-6701(93)90013-p"},{"key":"e_1_3_3_23_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(05)71881-X"},{"key":"e_1_3_3_24_2","unstructured":"European Committee on Antimicrobial Susceptibility Testing. 2017. EUCAST guidelines for detection of resistance mechanisms and specific resistances of clinical and\/or epidemiological importance version 2.0. http:\/\/www.eucast.org\/fileadmin\/src\/media\/PDFs\/EUCAST_files\/Resistance_mechanisms\/EUCAST_detection_of_resistance_mechanisms_170711.pdf."},{"key":"e_1_3_3_25_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu170"},{"key":"e_1_3_3_26_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01310-13"},{"key":"e_1_3_3_27_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13073-014-0090-6"},{"key":"e_1_3_3_28_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gku1196"},{"key":"e_1_3_3_29_2","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2014-15-3-r46"},{"key":"e_1_3_3_30_2","doi-asserted-by":"publisher","DOI":"10.1186\/s40793-016-0134-1"},{"key":"e_1_3_3_31_2","doi-asserted-by":"publisher","DOI":"10.1111\/apa.14584"},{"key":"e_1_3_3_32_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1399-6576.1992.tb03466.x"},{"key":"e_1_3_3_33_2","first-page":"889","article-title":"Application of pulsed-field gel electrophoresis in an outbreak of infection due to Klebsiella oxytoca","volume":"46","author":"Toldos CM","year":"1997","unstructured":"Toldos CM, Ortiz G, Camara M, Segovia M. 1997. Application of pulsed-field gel electrophoresis in an outbreak of infection due to Klebsiella oxytoca. J Med Microbiol 46:889\u2013890.","journal-title":"J Med Microbiol"},{"key":"e_1_3_3_34_2","doi-asserted-by":"publisher","DOI":"10.1001\/archinte.165.22.2639"},{"key":"e_1_3_3_35_2","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.016949-0"},{"key":"e_1_3_3_36_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.01216-12"},{"key":"e_1_3_3_37_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(00)02509-5"},{"key":"e_1_3_3_38_2","doi-asserted-by":"publisher","DOI":"10.1128\/MMBR.00078-15"},{"key":"e_1_3_3_39_2","first-page":"129","article-title":"Isolation and characterization of an SDS-degrading Klebsiella oxytoca","volume":"30","author":"Shukor MY","year":"2009","unstructured":"Shukor MY, Husin WS, Rahman MF, Shamaan NA, Syed MA. 2009. Isolation and characterization of an SDS-degrading Klebsiella oxytoca. J Environ Biol 30:129\u2013134.","journal-title":"J Environ Biol"}],"container-title":["Journal of Clinical Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/JCM.01980-19","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/JCM.01980-19","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,3,5]],"date-time":"2022-03-05T05:48:02Z","timestamp":1646459282000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/JCM.01980-19"}},"subtitle":[],"editor":[{"given":"Alexander","family":"Mellmann","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2020,4,23]]},"references-count":38,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2020,4,23]]}},"alternative-id":["10.1128\/JCM.01980-19"],"URL":"https:\/\/doi.org\/10.1128\/jcm.01980-19","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/568154","asserted-by":"object"}]},"ISSN":["0095-1137","1098-660X"],"issn-type":[{"value":"0095-1137","type":"print"},{"value":"1098-660X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2020,4,23]]},"assertion":[{"value":"2019-11-30","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2020-02-20","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2020-04-23","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e01980-19"}}