{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T04:33:40Z","timestamp":1789965220062,"version":"4.0.1"},"reference-count":38,"publisher":"American Society for Microbiology","issue":"7","license":[{"start":{"date-parts":[[2004,7,1]],"date-time":"2004-07-01T00:00:00Z","timestamp":1088640000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["J Clin Microbiol"],"published-print":{"date-parts":[[2004,7]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n                  <jats:p>\n                    Our previous analysis of 65 advanced dental caries lesions by traditional culture techniques indicated that lactobacilli were numerous in the advancing front of the progressive lesion. Production of organic acids by lactobacilli is considered to be important in causing decalcification of the dentinal matrix. The present study was undertaken to define more precisely the diversity of lactobacilli found in this environment and to quantify the major species and phylotypes relative to total load of lactobacilli by real-time PCR. Pooled DNA was amplified by PCR with\n                    <jats:italic>Lactobacillus<\/jats:italic>\n                    genus-specific primers for subsequent cloning, sequencing, and phylogenetic analysis. Based on 16S ribosomal DNA sequence comparisons, 18 different phylotypes of lactobacilli were detected, including strong representation of both novel and gastrointestinal phylotypes. Specific PCR primers were designed for nine prominent species, including\n                    <jats:italic>Lactobacillus gasseri<\/jats:italic>\n                    ,\n                    <jats:italic>L. ultunensis<\/jats:italic>\n                    ,\n                    <jats:italic>L. salivarius<\/jats:italic>\n                    ,\n                    <jats:italic>L. rhamnosus<\/jats:italic>\n                    ,\n                    <jats:italic>L. casei<\/jats:italic>\n                    ,\n                    <jats:italic>L. crispatus<\/jats:italic>\n                    ,\n                    <jats:italic>L. delbrueckii<\/jats:italic>\n                    ,\n                    <jats:italic>L. fermentum<\/jats:italic>\n                    , and\n                    <jats:italic>L. gallinarum<\/jats:italic>\n                    . More than three different species were identified as being present in most of the dentine samples, confirming the widespread distribution and numerical importance of various\n                    <jats:italic>Lactobacillus<\/jats:italic>\n                    spp. in carious dentine. Quantification by real-time PCR revealed various proportions of the nine species colonizing carious dentine, with higher mean loads of\n                    <jats:italic>L. gasseri<\/jats:italic>\n                    and\n                    <jats:italic>L. ultunensis<\/jats:italic>\n                    than of the other prevalent species. The findings provide a basis for further characterization of the pathogenicity of\n                    <jats:italic>Lactobacillus<\/jats:italic>\n                    spp. in the context of extension of the carious lesion.\n                  <\/jats:p>","DOI":"10.1128\/jcm.42.7.3128-3136.2004","type":"journal-article","created":{"date-parts":[[2004,7,8]],"date-time":"2004-07-08T14:19:31Z","timestamp":1089296371000},"page":"3128-3136","update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":315,"title":["Quantitative Analysis of Diverse\n                    <i>Lactobacillus<\/i>\n                    Species Present in Advanced Dental Caries"],"prefix":"10.1128","volume":"42","author":[{"given":"Roy","family":"Byun","sequence":"first","affiliation":[{"name":"Institute of Dental Research, Westmead Millennium Institute, and Westmead Centre for Oral Health, Sydney, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mangala A.","family":"Nadkarni","sequence":"additional","affiliation":[{"name":"Institute of Dental Research, Westmead Millennium Institute, and Westmead Centre for Oral Health, Sydney, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kim-Ly","family":"Chhour","sequence":"additional","affiliation":[{"name":"Institute of Dental Research, Westmead Millennium Institute, and Westmead Centre for Oral Health, Sydney, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"F. Elizabeth","family":"Martin","sequence":"additional","affiliation":[{"name":"Institute of Dental Research, Westmead Millennium Institute, and Westmead Centre for Oral Health, Sydney, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nicholas A.","family":"Jacques","sequence":"additional","affiliation":[{"name":"Institute of Dental Research, Westmead Millennium Institute, and Westmead Centre for Oral Health, Sydney, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Neil","family":"Hunter","sequence":"additional","affiliation":[{"name":"Institute of Dental Research, Westmead Millennium Institute, and Westmead Centre for Oral Health, Sydney, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_1_2_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0022-2836(05)80360-2"},{"key":"e_1_3_1_3_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2591.1990.tb00798.x"},{"key":"e_1_3_1_4_2","doi-asserted-by":"publisher","DOI":"10.1159\/000016631"},{"key":"e_1_3_1_5_2","first-page":"3","volume":"53","year":"1998","unstructured":"Botha, S. 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