{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,24]],"date-time":"2026-10-24T00:09:09Z","timestamp":1792800549155,"version":"4.5.0"},"reference-count":95,"publisher":"American Society for Microbiology","issue":"6","license":[{"start":{"date-parts":[[2023,6,29]],"date-time":"2023-06-29T00:00:00Z","timestamp":1687996800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/doi.org\/10.1128\/ASMCopyrightv2"},{"start":{"date-parts":[[2023,6,29]],"date-time":"2023-06-29T00:00:00Z","timestamp":1687996800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["J Virol"],"published-print":{"date-parts":[[2023,6,29]]},"abstract":"<jats:p>Human endogenous retroviruses (HERVs), which in the past have inserted themselves in various regions of the human genome, are to various degrees activated in virtually every cancer type. While a centralized naming system and resources summarizing HERV levels in cancers are lacking, the CancerHERVdb database provides a consolidated resource for cross-study comparisons, data exploration, and targeted searches of HERV activation.<\/jats:p>","DOI":"10.1128\/jvi.00059-23","type":"journal-article","created":{"date-parts":[[2023,5,31]],"date-time":"2023-05-31T14:00:20Z","timestamp":1685541620000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":34,"title":["CancerHERVdb: Human Endogenous Retrovirus (HERV) Expression Database for Human Cancer Accelerates Studies of the Retrovirome and Predictions for HERV-Based Therapies"],"prefix":"10.1128","volume":"97","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-2112-2202","authenticated-orcid":true,"given":"Erik","family":"Stricker","sequence":"first","affiliation":[{"name":"Baylor College of Medicine, Department of Molecular Virology and Microbiology, Houston, Texas, USA"},{"name":"Baylor College of Medicine, Department of Pediatrics, Houston, Texas, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Erin C.","family":"Peckham-Gregory","sequence":"additional","affiliation":[{"name":"Baylor College of Medicine, Department of Pediatrics, Houston, Texas, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michael E.","family":"Scheurer","sequence":"additional","affiliation":[{"name":"Baylor College of Medicine, Department of Pediatrics, Houston, Texas, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_3_2_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0404838101"},{"key":"e_1_3_3_3_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.282402"},{"key":"e_1_3_3_4_2","doi-asserted-by":"publisher","DOI":"10.3390\/biomedicines11030936"},{"key":"e_1_3_3_5_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.yexcr.2008.12.023"},{"key":"e_1_3_3_6_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2018.01448"},{"key":"e_1_3_3_7_2","doi-asserted-by":"publisher","DOI":"10.1038\/onc.2011.179"},{"key":"e_1_3_3_8_2","doi-asserted-by":"publisher","DOI":"10.1038\/sj.onc.1203794"},{"key":"e_1_3_3_9_2","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.78.19.10310-10319.2004"},{"key":"e_1_3_3_10_2","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.02771-06"},{"key":"e_1_3_3_11_2","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4614-7651-1_7"},{"key":"e_1_3_3_12_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00262-011-1183-3"},{"key":"e_1_3_3_13_2","doi-asserted-by":"publisher","DOI":"10.1158\/1078-0432.CCR-18-1728"},{"key":"e_1_3_3_14_2","doi-asserted-by":"publisher","DOI":"10.4049\/jimmunol.1200079"},{"key":"e_1_3_3_15_2","doi-asserted-by":"publisher","DOI":"10.1186\/1743-422X-11-58"},{"key":"e_1_3_3_16_2","doi-asserted-by":"publisher","DOI":"10.1158\/1078-0432.CCR-14-3197"},{"key":"e_1_3_3_17_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2015.07.011"},{"key":"e_1_3_3_18_2","doi-asserted-by":"publisher","DOI":"10.1126\/sciadv.abj3671"},{"key":"e_1_3_3_19_2","doi-asserted-by":"crossref","unstructured":"Stricker E Scheurer ME. 2021. PDF Data Extractor (PDE) - a free web application and R package allowing the extraction of tables from portable document format (PDF) files and high-throughput keyword searches of full-text articles. bioRxiv. doi:10.1101\/2021.07.13.452159.","DOI":"10.1101\/2021.07.13.452159"},{"key":"e_1_3_3_20_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41389-018-0114-y"},{"key":"e_1_3_3_21_2","doi-asserted-by":"publisher","DOI":"10.1111\/1523-1747.ep12329612"},{"key":"e_1_3_3_22_2","doi-asserted-by":"publisher","DOI":"10.15252\/embj.2018101107"},{"key":"e_1_3_3_23_2","doi-asserted-by":"publisher","DOI":"10.1111\/nan.12136"},{"key":"e_1_3_3_24_2","doi-asserted-by":"publisher","DOI":"10.1158\/0008-5472.CAN-17-1861"},{"key":"e_1_3_3_25_2","doi-asserted-by":"publisher","DOI":"10.1136\/jclinpath-2013-201841"},{"key":"e_1_3_3_26_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkh453"},{"key":"e_1_3_3_27_2","doi-asserted-by":"publisher","DOI":"10.1007\/s40264-020-00988-3"},{"key":"e_1_3_3_28_2","doi-asserted-by":"publisher","DOI":"10.1177\/13524585211024997"},{"key":"e_1_3_3_29_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.canlet.2009.02.008"},{"key":"e_1_3_3_30_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13046-015-0199-5"},{"key":"e_1_3_3_31_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41420-021-00562-5"},{"key":"e_1_3_3_32_2","doi-asserted-by":"publisher","DOI":"10.1038\/onc.2013.366"},{"key":"e_1_3_3_33_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1303524110"},{"key":"e_1_3_3_34_2","doi-asserted-by":"publisher","DOI":"10.1111\/cas.13914"},{"key":"e_1_3_3_35_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.canlet.2018.11.007"},{"key":"e_1_3_3_36_2","doi-asserted-by":"publisher","DOI":"10.1155\/2019\/5421985"},{"key":"e_1_3_3_37_2","doi-asserted-by":"publisher","DOI":"10.2147\/OTT.S160493"},{"key":"e_1_3_3_38_2","doi-asserted-by":"publisher","DOI":"10.1186\/s40425-019-0554-8"},{"key":"e_1_3_3_39_2","doi-asserted-by":"publisher","DOI":"10.2147\/JIR.S324336"},{"key":"e_1_3_3_40_2","doi-asserted-by":"publisher","DOI":"10.1007\/s10753-021-01547-3"},{"key":"e_1_3_3_41_2","doi-asserted-by":"publisher","DOI":"10.31557\/APJCP.2021.22.6.1883"},{"key":"e_1_3_3_42_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12935-019-0813-2"},{"key":"e_1_3_3_43_2","doi-asserted-by":"publisher","DOI":"10.1136\/jitc-2019-000157"},{"key":"e_1_3_3_44_2","doi-asserted-by":"publisher","DOI":"10.1158\/2326-6066.CIR-20-0315"},{"key":"e_1_3_3_45_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2022.850444"},{"key":"e_1_3_3_46_2","first-page":"337","article-title":"Induction of retrovirus particles in human testicular tumor (Tera-1) cell cultures: an electron microscopic study","volume":"63","author":"Bronson DL","year":"1979","unstructured":"Bronson DL, Fraley EE, Fogh J, Kalter SS. 1979. Induction of retrovirus particles in human testicular tumor (Tera-1) cell cultures: an electron microscopic study. J Natl Cancer Inst 63:337\u2013339.","journal-title":"J Natl Cancer Inst"},{"key":"e_1_3_3_47_2","doi-asserted-by":"publisher","DOI":"10.1006\/viro.1993.1487"},{"key":"e_1_3_3_48_2","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.69.10.6408-6416.1995"},{"key":"e_1_3_3_49_2","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.70.4.2654-2657.1996"},{"key":"e_1_3_3_50_2","doi-asserted-by":"publisher","DOI":"10.3389\/fnins.2021.648629"},{"key":"e_1_3_3_51_2","doi-asserted-by":"publisher","DOI":"10.1186\/1742-4690-3-67"},{"key":"e_1_3_3_52_2","doi-asserted-by":"publisher","DOI":"10.3390\/v8080215"},{"key":"e_1_3_3_53_2","doi-asserted-by":"publisher","DOI":"10.1038\/sj.onc.1210631"},{"key":"e_1_3_3_54_2","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-virology-100114-055056"},{"key":"e_1_3_3_55_2","volume-title":"Retroviruses.","author":"Rosenberg N","year":"1997","unstructured":"Rosenberg N, Jolicoeur P. 1997. Retroviral pathogenesis. In Coffin JM, Hughes SH, Varmus HE (ed), Retroviruses. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY."},{"key":"e_1_3_3_56_2","doi-asserted-by":"publisher","DOI":"10.3390\/v3040398"},{"key":"e_1_3_3_57_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1602336113"},{"key":"e_1_3_3_58_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.1222077"},{"key":"e_1_3_3_59_2","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.00919-14"},{"key":"e_1_3_3_60_2","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.genom.7.080505.115700"},{"key":"e_1_3_3_61_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12977-015-0136-x"},{"key":"e_1_3_3_62_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2012.04.019"},{"key":"e_1_3_3_63_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2008.09.022"},{"key":"e_1_3_3_64_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.gde.2012.02.006"},{"key":"e_1_3_3_65_2","doi-asserted-by":"publisher","DOI":"10.1038\/35057062"},{"key":"e_1_3_3_66_2","doi-asserted-by":"publisher","DOI":"10.18632\/oncotarget.1403"},{"key":"e_1_3_3_67_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.140061.112"},{"key":"e_1_3_3_68_2","doi-asserted-by":"publisher","DOI":"10.1038\/nature17161"},{"key":"e_1_3_3_69_2","doi-asserted-by":"publisher","DOI":"10.1126\/sciadv.aat9820"},{"key":"e_1_3_3_70_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0089577"},{"key":"e_1_3_3_71_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12920-023-01486-y"},{"key":"e_1_3_3_72_2","unstructured":"Greenwald B. 2018. Pubmed-Batch-Download. https:\/\/github.com\/billgreenwald\/Pubmed-Batch-Download."},{"key":"e_1_3_3_73_2","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.genet.42.110807.091501"},{"key":"e_1_3_3_74_2","doi-asserted-by":"publisher","DOI":"10.1186\/1742-4690-8-90"},{"key":"e_1_3_3_75_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13100-016-0081-9"},{"key":"e_1_3_3_76_2","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-24277-4"},{"key":"e_1_3_3_77_2","unstructured":"Urbanek S Horner J. 2022. Cairo: R graphics device using Cairo graphics library for creating high-quality bitmap (PNG JPEG TIFF) vector (PDF SVG PostScript) and display (X11 and Win32) output."},{"key":"e_1_3_3_78_2","doi-asserted-by":"crossref","unstructured":"Wickham H Fran\u00e7ois R Henry L M\u00fcller K. 2021. dplyr: a grammar of data manipulation v1.0.7. https:\/\/CRAN.R-project.org\/package=dplyr.","DOI":"10.1007\/978-1-4842-6876-6_1"},{"key":"e_1_3_3_79_2","unstructured":"Wickham H. 2019. stringr: simple consistent wrappers for common string operations."},{"key":"e_1_3_3_80_2","unstructured":"Bengtsson H. 2021. R.utils: various programming utilities."},{"key":"e_1_3_3_81_2","doi-asserted-by":"crossref","unstructured":"Sievert C. 2020. Interactive web-based data visualization with R plotly and shiny.","DOI":"10.1201\/9780429447273"},{"key":"e_1_3_3_82_2","unstructured":"Chang W Cheng J Allaire JJ Sievert C Schloerke B Xie Y Allen J McPherson J Dipert A Borges B. 2021. shiny: web application framework for R."},{"key":"e_1_3_3_83_2","unstructured":"Pedersen TL Nijs V Schaffner T Nantz E. 2020. shinyFiles: a server-side file system viewer for Shiny."},{"key":"e_1_3_3_84_2","unstructured":"Chang W Borges Ribeiro B. 2018. shinydashboard: create dashboards with \u2018Shiny\u2019."},{"key":"e_1_3_3_85_2","unstructured":"Granjon D. 2021. shinydashboardPlus: add more \u2018AdminLTE2\u2019 components to \u2018shinydashboard\u2019."},{"key":"e_1_3_3_86_2","unstructured":"Attali D. 2020. shinyjs: easily improve the user experience of your Shiny apps in seconds."},{"key":"e_1_3_3_87_2","unstructured":"Thieurmel B Perrier V. 2021. shinymanager: authentication management for \u2018Shiny\u2019 applications."},{"key":"e_1_3_3_88_2","unstructured":"Sali A Attali D. 2020. shinycssloaders: add loading animations to a \u2018shiny\u2019 output while it\u2019s recalculating."},{"key":"e_1_3_3_89_2","unstructured":"Premraj R. 2021. mailR: a utility to send emails from R."},{"key":"e_1_3_3_90_2","unstructured":"Cs\u00e1rdi G Podg\u00f3rski K Geldreich R. 2020. zip: cross-platform \u2018zip\u2019 compression."},{"key":"e_1_3_3_91_2","unstructured":"Xie Y Cheng J Tan X. 2022. DT: a wrapper of the JavaScript library \u2018DataTables\u2019."},{"key":"e_1_3_3_92_2","unstructured":"Schauberger P Walker A. 2021. openxlsx: read write and edit xlsx files."},{"key":"e_1_3_3_93_2","unstructured":"Gohel D. 2022. officer: manipulation of Microsoft Word and PowerPoint documents."},{"key":"e_1_3_3_94_2","unstructured":"Fantini D. 2019. easyPubMed: search and retrieve scientific publication records from PubMed."},{"key":"e_1_3_3_95_2","doi-asserted-by":"publisher","DOI":"10.32614\/RJ-2017-058"},{"key":"e_1_3_3_96_2","unstructured":"R Core Team. 2020. R: a language and environment for statistical computing."}],"container-title":["Journal of Virology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/jvi.00059-23","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/jvi.00059-23","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,6,29]],"date-time":"2023-06-29T13:04:38Z","timestamp":1688043878000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/jvi.00059-23"}},"subtitle":[],"editor":[{"given":"Viviana","family":"Simon","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2023,6,29]]},"references-count":95,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2023,6,29]]}},"alternative-id":["10.1128\/jvi.00059-23"],"URL":"https:\/\/doi.org\/10.1128\/jvi.00059-23","relation":{},"ISSN":["0022-538X","1098-5514"],"issn-type":[{"value":"0022-538X","type":"print"},{"value":"1098-5514","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,6,29]]},"assertion":[{"value":"2023-01-21","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2023-05-10","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2023-05-31","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e00059-23"}}