{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,25]],"date-time":"2026-06-25T06:56:50Z","timestamp":1782370610244,"version":"3.54.5"},"reference-count":71,"publisher":"American Society for Microbiology","issue":"4","license":[{"start":{"date-parts":[[2022,8,30]],"date-time":"2022-08-30T00:00:00Z","timestamp":1661817600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2022,8,30]],"date-time":"2022-08-30T00:00:00Z","timestamp":1661817600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"funder":[{"name":"BactiVac","award":["BVNCP3-24"],"award-info":[{"award-number":["BVNCP3-24"]}]},{"DOI":"10.13039\/100000865","name":"Bill and Melinda Gates Foundation","doi-asserted-by":"publisher","award":["OPP1151153"],"award-info":[{"award-number":["OPP1151153"]}],"id":[{"id":"10.13039\/100000865","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000272","name":"National Institute for Health Research","doi-asserted-by":"publisher","award":["Cambridge Biomedical Research Centre at the Cambridge University Hospitals NHS Foundation Trust"],"award-info":[{"award-number":["Cambridge Biomedical Research Centre at the Cambridge University Hospitals NHS Foundation Trust"]}],"id":[{"id":"10.13039\/501100000272","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["mBio"],"published-print":{"date-parts":[[2022,8,30]]},"abstract":"<jats:p>\n            The bacterium\n            <jats:named-content content-type=\"genus-species\">Salmonella<\/jats:named-content>\n            Typhimurium forms a devastating burden in sub-Saharan Africa by causing invasive bloodstream infections. Additionally,\n            <jats:named-content content-type=\"genus-species\">Salmonella<\/jats:named-content>\n            Typhimurium presents high levels of antimicrobial resistance, jeopardizing treatment.\n          <\/jats:p>","DOI":"10.1128\/mbio.00374-22","type":"journal-article","created":{"date-parts":[[2022,7,18]],"date-time":"2022-07-18T13:01:06Z","timestamp":1658149266000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":11,"title":["Genetic and Structural Variation in the O-Antigen of Salmonella enterica Serovar Typhimurium Isolates Causing Bloodstream Infections in the Democratic Republic of the Congo"],"prefix":"10.1128","volume":"13","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-8434-5732","authenticated-orcid":true,"given":"Sandra","family":"Van Puyvelde","sequence":"first","affiliation":[{"name":"Cambridge Institute of Therapeutic Immunology and Infectious Disease, Department of Medicine, University of Cambridge, Cambridge, United Kingdom"},{"name":"Laboratory of Medical Microbiology, Vaccine and Infectious Disease Institute, University of Antwerp, Antwerp, Belgium"},{"name":"Wellcome Trust Sanger Institute, Hinxton, United Kingdom"},{"name":"Institute of Tropical Medicine, Antwerp, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gianmarco","family":"Gasperini","sequence":"additional","affiliation":[{"name":"GSK Vaccines Institute for Global Health, Siena, Italy"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1337-2132","authenticated-orcid":true,"given":"Michael","family":"Biggel","sequence":"additional","affiliation":[{"name":"Laboratory of Medical Microbiology, Vaccine and Infectious Disease Institute, University of Antwerp, Antwerp, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marie-France","family":"Phoba","sequence":"additional","affiliation":[{"name":"Department of Microbiology, Institut National de Recherche Biom\u00e9dicale, Kinshasa, Democratic Republic of the Congo"},{"name":"Department of Medical Biology, University Teaching Hospital of Kinshasa, Kinshasa, Democratic Republic of the Congo"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6183-965X","authenticated-orcid":true,"given":"Maria Michelina","family":"Raso","sequence":"additional","affiliation":[{"name":"GSK Vaccines Institute for Global Health, Siena, Italy"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tessa","family":"de Block","sequence":"additional","affiliation":[{"name":"Institute of Tropical Medicine, Antwerp, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Leen N.","family":"Vanheer","sequence":"additional","affiliation":[{"name":"Institute of Tropical Medicine, Antwerp, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stijn","family":"Deborggraeve","sequence":"additional","affiliation":[{"name":"Institute of Tropical Medicine, Antwerp, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Olivier","family":"Vandenberg","sequence":"additional","affiliation":[{"name":"Clinical Research and Innovation Unit, Laboratoire Hospitalier Universitaire de Bruxelles-Universitair Laboratorium Brussel, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium"},{"name":"Centre for Environmental Health and Occupational Health, School of Public Health, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium"},{"name":"Division of Infection and Immunity, Faculty of Medical Sciences, University College London, London, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nicholas","family":"Thomson","sequence":"additional","affiliation":[{"name":"Wellcome Trust Sanger Institute, Hinxton, United Kingdom"},{"name":"London School of Hygiene and Tropical Medicine, London, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Neil","family":"Ravenscroft","sequence":"additional","affiliation":[{"name":"Department of Chemistry, University of Cape Town, Rondebosch, South Africa"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Calman A.","family":"Maclennan","sequence":"additional","affiliation":[{"name":"Jenner Institute, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Barbara","family":"Bellich","sequence":"additional","affiliation":[{"name":"Department of Life Sciences, University of Trieste, Trieste, Italy"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Paola","family":"Cescutti","sequence":"additional","affiliation":[{"name":"Department of Life Sciences, University of Trieste, Trieste, Italy"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gordon","family":"Dougan","sequence":"additional","affiliation":[{"name":"Cambridge Institute of Therapeutic Immunology and Infectious Disease, Department of Medicine, University of Cambridge, Cambridge, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jan","family":"Jacobs","sequence":"additional","affiliation":[{"name":"Institute of Tropical Medicine, Antwerp, Belgium"},{"name":"Department of Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Octavie","family":"Lunguya","sequence":"additional","affiliation":[{"name":"Department of Microbiology, Institut National de Recherche Biom\u00e9dicale, Kinshasa, Democratic Republic of the Congo"},{"name":"Department of Medical Biology, University Teaching Hospital of Kinshasa, Kinshasa, Democratic Republic of the Congo"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Francesca","family":"Micoli","sequence":"additional","affiliation":[{"name":"GSK Vaccines Institute for Global Health, Siena, Italy"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_2_2_2","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(19)30418-9"},{"key":"e_1_3_2_3_2","doi-asserted-by":"publisher","DOI":"10.1128\/ecosalplus.ESP-0007-2018"},{"key":"e_1_3_2_4_2","doi-asserted-by":"publisher","DOI":"10.1038\/ng.2423"},{"key":"e_1_3_2_5_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-019-11844-z"},{"key":"e_1_3_2_6_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0007782"},{"key":"e_1_3_2_7_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0008377"},{"key":"e_1_3_2_8_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0008440"},{"key":"e_1_3_2_9_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12916-020-01652-4"},{"key":"e_1_3_2_10_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.vaccine.2016.03.072"},{"key":"e_1_3_2_11_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.micpath.2013.05.014"},{"key":"e_1_3_2_12_2","doi-asserted-by":"publisher","DOI":"10.1128\/iai.60.11.4679-4686.1992"},{"key":"e_1_3_2_13_2","doi-asserted-by":"publisher","DOI":"10.1128\/jb.169.2.856-863.1987"},{"key":"e_1_3_2_14_2","doi-asserted-by":"publisher","DOI":"10.1128\/iai.25.3.863-872.1979"},{"key":"e_1_3_2_15_2","doi-asserted-by":"publisher","DOI":"10.1128\/iai.32.2.490-496.1981"},{"key":"e_1_3_2_16_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1807655115"},{"key":"e_1_3_2_17_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.vaccine.2016.11.089"},{"key":"e_1_3_2_18_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.00547-15"},{"key":"e_1_3_2_19_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0005493"},{"key":"e_1_3_2_20_2","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.02379-17"},{"key":"e_1_3_2_21_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.184.6.1669-1677.2002"},{"key":"e_1_3_2_22_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.carres.2013.12.003"},{"key":"e_1_3_2_23_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.43.8.4208-4211.2005"},{"key":"e_1_3_2_24_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkg058"},{"key":"e_1_3_2_25_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0008121"},{"key":"e_1_3_2_26_2","doi-asserted-by":"publisher","DOI":"10.1128\/jb.178.20.5904-5909.1996"},{"key":"e_1_3_2_27_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2672.2010.04877.x"},{"key":"e_1_3_2_28_2","doi-asserted-by":"publisher","DOI":"10.1128\/jb.170.1.98-102.1988"},{"key":"e_1_3_2_29_2","doi-asserted-by":"publisher","DOI":"10.1111\/mmi.12933"},{"key":"e_1_3_2_30_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2017.00235"},{"key":"e_1_3_2_31_2","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.01364-20"},{"key":"e_1_3_2_32_2","doi-asserted-by":"publisher","DOI":"10.3390\/ijms22031309"},{"key":"e_1_3_2_33_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1002918"},{"key":"e_1_3_2_34_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.188.7.2735-2739.2006"},{"key":"e_1_3_2_35_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1005667"},{"key":"e_1_3_2_36_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2958.2012.08202.x"},{"key":"e_1_3_2_37_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-021-00911-1"},{"key":"e_1_3_2_38_2","doi-asserted-by":"publisher","DOI":"10.1128\/iai.63.2.437-441.1995"},{"key":"e_1_3_2_39_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-695X.1999.tb01375.x"},{"key":"e_1_3_2_40_2","doi-asserted-by":"publisher","DOI":"10.1093\/femsle\/fnx062"},{"key":"e_1_3_2_41_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0139847"},{"key":"e_1_3_2_42_2","doi-asserted-by":"publisher","DOI":"10.3390\/molecules23061340"},{"key":"e_1_3_2_43_2","doi-asserted-by":"publisher","DOI":"10.1128\/iai.64.7.2709-2715.1996"},{"key":"e_1_3_2_44_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.01021-16"},{"key":"e_1_3_2_45_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0002103"},{"key":"e_1_3_2_46_2","doi-asserted-by":"publisher","DOI":"10.3201\/eid2004.131488"},{"key":"e_1_3_2_47_2","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/civ713"},{"key":"e_1_3_2_48_2","doi-asserted-by":"publisher","DOI":"10.3201\/eid1810.120525"},{"key":"e_1_3_2_49_2","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/cix342"},{"key":"e_1_3_2_50_2","volume-title":"Antigenic formulae of the Salmonellae serovars.","author":"Grimont PAD","year":"2007","unstructured":"Grimont PAD, Weill F-X. 2007. Antigenic formulae of the Salmonellae serovars. World Health Organization, Geneva, Switzerland."},{"key":"e_1_3_2_51_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.091017.109"},{"key":"e_1_3_2_52_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp352"},{"key":"e_1_3_2_53_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gku1196"},{"key":"e_1_3_2_54_2","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000056"},{"key":"e_1_3_2_55_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu033"},{"key":"e_1_3_2_56_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkw290"},{"key":"e_1_3_2_57_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.074492.107"},{"key":"e_1_3_2_58_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq683"},{"key":"e_1_3_2_59_2","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2012-13-6-r56"},{"key":"e_1_3_2_60_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu153"},{"key":"e_1_3_2_61_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv421"},{"key":"e_1_3_2_62_2","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000132"},{"key":"e_1_3_2_63_2","unstructured":"Wick RR. 2021. Filtlong v.0.2.0. https:\/\/github.com\/rrwick\/Filtlong."},{"key":"e_1_3_2_64_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1005595"},{"key":"e_1_3_2_65_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr039"},{"key":"e_1_3_2_66_2","doi-asserted-by":"publisher","DOI":"10.1089\/10665270050081478"},{"key":"e_1_3_2_67_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.ab.2012.10.038"},{"key":"e_1_3_2_68_2","doi-asserted-by":"publisher","DOI":"10.1016\/0008-6215(84)85106-X"},{"key":"e_1_3_2_69_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0008-6215(00)80510-8"},{"key":"e_1_3_2_70_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0008-6215(00)82604-X"},{"key":"e_1_3_2_71_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-020-80421-y"},{"key":"e_1_3_2_72_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0172163"}],"container-title":["mBio"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/mbio.00374-22","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/mbio.00374-22","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,8,30]],"date-time":"2022-08-30T13:19:07Z","timestamp":1661865547000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/mbio.00374-22"}},"subtitle":[],"editor":[{"given":"Philippe J.","family":"Sansonetti","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2022,8,30]]},"references-count":71,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2022,8,30]]}},"alternative-id":["10.1128\/mbio.00374-22"],"URL":"https:\/\/doi.org\/10.1128\/mbio.00374-22","relation":{},"ISSN":["2150-7511"],"issn-type":[{"value":"2150-7511","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,8,30]]},"assertion":[{"value":"2022-02-22","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2022-06-29","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2022-07-18","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e00374-22"}}