{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,30]],"date-time":"2026-06-30T16:37:23Z","timestamp":1782837443042,"version":"3.54.5"},"reference-count":26,"publisher":"American Society for Microbiology","issue":"6","license":[{"start":{"date-parts":[[2023,6,20]],"date-time":"2023-06-20T00:00:00Z","timestamp":1687219200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2023,6,20]],"date-time":"2023-06-20T00:00:00Z","timestamp":1687219200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["Microbiol Resour Announc"],"published-print":{"date-parts":[[2023,6,20]]},"abstract":"<jats:p>Surveillance helps us identify and monitor strains with zoonotic potential. A tracheal swab from a pelican on a Peruvian beach was H5N1 positive (clade 2.3.4.4b) using Oxford Nanopore\u2019s MinION platform. The near-complete genome sequence of strain VFAR-140 will aid us in understanding avian influenza epidemiology and spread.<\/jats:p>","DOI":"10.1128\/mra.00199-23","type":"journal-article","created":{"date-parts":[[2023,5,1]],"date-time":"2023-05-01T14:02:27Z","timestamp":1682949747000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":8,"title":["Detection and Genomic Characterization of an Avian Influenza Virus Subtype H5N1 (Clade 2.3.4.4b) Strain Isolated from a Pelican in Peru"],"prefix":"10.1128","volume":"12","author":[{"given":"Manolo","family":"Fern\u00e1ndez-D\u00edaz","sequence":"first","affiliation":[{"name":"Laboratorios de Investigaci\u00f3n y Desarrollo, Farmacol\u00f3gicos Veterinarios S.A.C. (FARVET SAC), Chincha Alta, Ica, Peru"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Doris","family":"Villanueva-P\u00e9rez","sequence":"additional","affiliation":[{"name":"Laboratorios de Investigaci\u00f3n y Desarrollo, Farmacol\u00f3gicos Veterinarios S.A.C. (FARVET SAC), Chincha Alta, Ica, Peru"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4177-3125","authenticated-orcid":true,"given":"Luis","family":"Tataje-Lavanda","sequence":"additional","affiliation":[{"name":"Laboratorios de Investigaci\u00f3n y Desarrollo, Farmacol\u00f3gicos Veterinarios S.A.C. (FARVET SAC), Chincha Alta, Ica, Peru"},{"name":"Escuela Profesional de Medicina Humana, Universidad Privada San Juan Bautista, Lima, Peru"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Angela","family":"Montalvan-Avalos","sequence":"additional","affiliation":[{"name":"Laboratorios de Investigaci\u00f3n y Desarrollo, Farmacol\u00f3gicos Veterinarios S.A.C. (FARVET SAC), Chincha Alta, Ica, Peru"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gisela","family":"Isasi-Rivas","sequence":"additional","affiliation":[{"name":"Laboratorios de Investigaci\u00f3n y Desarrollo, Farmacol\u00f3gicos Veterinarios S.A.C. (FARVET SAC), Chincha Alta, Ica, Peru"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Milagros","family":"Lulo-Vargas","sequence":"additional","affiliation":[{"name":"Laboratorios de Investigaci\u00f3n y Desarrollo, Farmacol\u00f3gicos Veterinarios S.A.C. (FARVET SAC), Chincha Alta, Ica, Peru"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Manolo","family":"Fern\u00e1ndez-S\u00e1nchez","sequence":"additional","affiliation":[{"name":"Laboratorios de Investigaci\u00f3n y Desarrollo, Farmacol\u00f3gicos Veterinarios S.A.C. (FARVET SAC), Chincha Alta, Ica, Peru"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_2_2_2","doi-asserted-by":"publisher","DOI":"10.1099\/vir.0.81800-0"},{"key":"e_1_3_2_3_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.tree.2023.02.002"},{"key":"e_1_3_2_4_2","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4939-0758-8_10"},{"key":"e_1_3_2_5_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0067598"},{"key":"e_1_3_2_6_2","doi-asserted-by":"publisher","DOI":"10.1128\/jcm.33.10.2624-2630.1995"},{"key":"e_1_3_2_7_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jviromet.2009.09.014"},{"key":"e_1_3_2_8_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jviromet.2017.11.005"},{"key":"e_1_3_2_9_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0081842"},{"key":"e_1_3_2_10_2","unstructured":"World Organization for Animal Health. 2021. OIE terrestrial manual 2021."},{"key":"e_1_3_2_11_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1727-y"},{"key":"e_1_3_2_12_2","doi-asserted-by":"crossref","unstructured":"Juul S Izquierdo F Hurst A Dai X Wright A Kulesha E Pettett R Turner DJ. 2015. What\u2019s in my pot? Real-time species identification on the MinION. bioRxiv. doi:10.1101\/030742.","DOI":"10.1101\/030742"},{"key":"e_1_3_2_13_2","doi-asserted-by":"publisher","DOI":"10.1093\/gigascience\/giaa105"},{"key":"e_1_3_2_14_2","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2014-15-3-r46"},{"key":"e_1_3_2_15_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-385"},{"key":"e_1_3_2_16_2","unstructured":"Wick RR. 2018. Porechop. Github. https:\/\/github.com\/rrwick\/Porechop\/. Retrieved 28 February 2023."},{"key":"e_1_3_2_17_2","doi-asserted-by":"publisher","DOI":"10.1038\/s43588-021-00073-4"},{"key":"e_1_3_2_18_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt282"},{"key":"e_1_3_2_19_2","unstructured":"Li H. 2017. BWA-MEM. GitHub. https:\/\/github.com\/lh3\/bwa. Accessed 28 February 2023."},{"key":"e_1_3_2_20_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp352"},{"key":"e_1_3_2_21_2","unstructured":"Centre for Virus Research. 2023. weeSAM. https:\/\/github.com\/centre-for-virus-research\/weeSAM. Accessed 31 January 2023."},{"key":"e_1_3_2_22_2","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msy096"},{"key":"e_1_3_2_23_2","doi-asserted-by":"publisher","DOI":"10.3390\/pathogens12010036"},{"key":"e_1_3_2_24_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.virusres.2009.04.008"},{"key":"e_1_3_2_25_2","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.00435-07"},{"key":"e_1_3_2_26_2","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.01698-07"},{"key":"e_1_3_2_27_2","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.00993-06"}],"container-title":["Microbiology Resource Announcements"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/mra.00199-23","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/mra.00199-23","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,6,20]],"date-time":"2023-06-20T13:02:55Z","timestamp":1687266175000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/mra.00199-23"}},"subtitle":[],"editor":[{"given":"John J.","family":"Dennehy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2023,6,20]]},"references-count":26,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2023,6,20]]}},"alternative-id":["10.1128\/mra.00199-23"],"URL":"https:\/\/doi.org\/10.1128\/mra.00199-23","relation":{},"ISSN":["2576-098X"],"issn-type":[{"value":"2576-098X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,6,20]]},"assertion":[{"value":"2023-03-14","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2023-04-13","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2023-05-01","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e00199-23"}}