{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,22]],"date-time":"2026-09-22T09:19:38Z","timestamp":1790068778228,"version":"4.0.1"},"reference-count":59,"publisher":"American Society for Microbiology","issue":"3","license":[{"start":{"date-parts":[[2017,6,28]],"date-time":"2017-06-28T00:00:00Z","timestamp":1498608000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2017,6,28]],"date-time":"2017-06-28T00:00:00Z","timestamp":1498608000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["DGE-1256259"],"award-info":[{"award-number":["DGE-1256259"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["MCB-0702395"],"award-info":[{"award-number":["MCB-0702395"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["NTL-LTER DEB-1440297"],"award-info":[{"award-number":["NTL-LTER DEB-1440297"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["DEB-1344254"],"award-info":[{"award-number":["DEB-1344254"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000015","name":"U.S. Department of Energy","doi-asserted-by":"publisher","award":["DE-AC02-06CH11357"],"award-info":[{"award-number":["DE-AC02-06CH11357"]}],"id":[{"id":"10.13039\/100000015","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["mSphere"],"published-print":{"date-parts":[[2017,6,28]]},"abstract":"<jats:p>Lakes are excellent systems for investigating bacterial community dynamics because they have clear boundaries and strong environmental gradients. The results of our research demonstrate that bacterial community composition varies by year, a finding which likely applies to other ecosystems and has implications for study design and interpretation. Understanding the drivers and controls of bacterial communities on long time scales would improve both our knowledge of fundamental properties of bacterial communities and our ability to predict community states. In this specific ecosystem, bog lakes play a disproportionately large role in global carbon cycling, and the information presented here may ultimately help refine carbon budgets for these lakes. Finally, all data and code in this study are publicly available. We hope that this will serve as a resource for anyone seeking to answer their own microbial ecology questions using a multiyear time series.<\/jats:p>","DOI":"10.1128\/msphere.00169-17","type":"journal-article","created":{"date-parts":[[2017,6,28]],"date-time":"2017-06-28T20:25:38Z","timestamp":1498681538000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":61,"title":["Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes"],"prefix":"10.1128","volume":"2","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-7551-4810","authenticated-orcid":false,"given":"Alexandra M.","family":"Linz","sequence":"first","affiliation":[{"name":"Department of Bacteriology, University of Wisconsin\u2014Madison, Madison, Wisconsin, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Benjamin C.","family":"Crary","sequence":"additional","affiliation":[{"name":"Department of Bacteriology, University of Wisconsin\u2014Madison, Madison, Wisconsin, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ashley","family":"Shade","sequence":"additional","affiliation":[{"name":"Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sarah","family":"Owens","sequence":"additional","affiliation":[{"name":"Biosciences Division, Argonne National Laboratory, Argonne, Illinois, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jack A.","family":"Gilbert","sequence":"additional","affiliation":[{"name":"Biosciences Division, Argonne National Laboratory, Argonne, Illinois, USA"},{"name":"Computation Institute, University of Chicago, Chicago, Illinois, USA"},{"name":"Department of Ecology and Evolution, Department of Surgery, University of Chicago, Chicago, Illinois, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rob","family":"Knight","sequence":"additional","affiliation":[{"name":"Center for Microbiome Innovation, Jacobs School of Engineering, University of California, San Diego, La Jolla, California, USA"},{"name":"Department of Pediatrics, University of California, San Diego School of Medicine, La Jolla, California, USA"},{"name":"Department of Computer Science and Engineering, Jacobs School of Engineering, University of California San Diego, La Jolla, California, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Katherine D.","family":"McMahon","sequence":"additional","affiliation":[{"name":"Department of Bacteriology, University of Wisconsin\u2014Madison, Madison, Wisconsin, USA"},{"name":"Department of Civil and Environmental Engineering, University of Wisconsin\u2014Madison, Madison, Wisconsin, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_2_2_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2013.54"},{"key":"e_1_3_2_3_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.mib.2015.04.004"},{"key":"e_1_3_2_4_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2012.00318"},{"key":"e_1_3_2_5_2","doi-asserted-by":"publisher","DOI":"10.1007\/s10980-012-9758-8"},{"key":"e_1_3_2_6_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.aaa9942"},{"key":"e_1_3_2_7_2","doi-asserted-by":"publisher","DOI":"10.4319\/lo.2006.51.3.1274"},{"key":"e_1_3_2_8_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2014.00185"},{"key":"e_1_3_2_9_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2015.241"},{"key":"e_1_3_2_10_2","doi-asserted-by":"publisher","DOI":"10.3354\/ame01277"},{"key":"e_1_3_2_11_2","doi-asserted-by":"publisher","DOI":"10.1111\/1758-2229.12044"},{"key":"e_1_3_2_12_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2012.56"},{"key":"e_1_3_2_13_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0032772"},{"key":"e_1_3_2_14_2","doi-asserted-by":"publisher","DOI":"10.1111\/1758-2229.12104"},{"key":"e_1_3_2_15_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2012.21"},{"key":"e_1_3_2_16_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2011.113"},{"key":"e_1_3_2_17_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00248-004-0223-3"},{"key":"e_1_3_2_18_2","doi-asserted-by":"publisher","DOI":"10.1111\/ele.12478"},{"key":"e_1_3_2_19_2","doi-asserted-by":"publisher","DOI":"10.3354\/ame01801"},{"key":"e_1_3_2_20_2","doi-asserted-by":"publisher","DOI":"10.1128\/MMBR.00028-10"},{"key":"e_1_3_2_21_2","doi-asserted-by":"publisher","DOI":"10.1111\/mec.13319"},{"key":"e_1_3_2_22_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2014.135"},{"key":"e_1_3_2_23_2","doi-asserted-by":"publisher","DOI":"10.1128\/mSystems.00013-16"},{"key":"e_1_3_2_24_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.tim.2015.01.007"},{"key":"e_1_3_2_25_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.65.10.4630-4636.1999"},{"key":"e_1_3_2_26_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1462-2920.2007.01527.x"},{"key":"e_1_3_2_27_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1462-2920.2011.02546.x"},{"key":"e_1_3_2_28_2","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro1643"},{"key":"e_1_3_2_29_2","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro1341"},{"key":"e_1_3_2_30_2","doi-asserted-by":"publisher","DOI":"10.4319\/lo.2005.50.6.1718"},{"key":"e_1_3_2_31_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2011.107"},{"key":"e_1_3_2_32_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0602399103"},{"key":"e_1_3_2_33_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2014.153"},{"key":"e_1_3_2_34_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2008.81"},{"key":"e_1_3_2_35_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2012.118"},{"key":"e_1_3_2_36_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00248-003-1008-9"},{"key":"e_1_3_2_37_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2007.6"},{"key":"e_1_3_2_38_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1462-2920.2006.01039.x"},{"key":"e_1_3_2_39_2","first-page":"936","article-title":"Spatial synchrony in microbial community dynamics: testing among-year and lake patterns","volume":"30","author":"Rusak JA","year":"2009","unstructured":"Rusak JA Jones SE Kent AD Shade A McMahon TD . 2009. Spatial synchrony in microbial community dynamics: testing among-year and lake patterns. Verh Int Verein Limnol30:936\u2013940. http:\/\/www3.nd.edu\/~sjones20\/ewExternalFiles\/Rusaketal2009_SIL.pdf .","journal-title":"Verh Int Verein Limnol"},{"key":"e_1_3_2_40_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.1198078"},{"key":"e_1_3_2_41_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2008.74"},{"key":"e_1_3_2_42_2","doi-asserted-by":"publisher","DOI":"10.1038\/nmicrobiol.2016.48"},{"key":"e_1_3_2_43_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01774-14"},{"key":"e_1_3_2_44_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00203-010-0578-4"},{"key":"e_1_3_2_45_2","doi-asserted-by":"publisher","DOI":"10.4319\/lo.2007.52.2.0487"},{"key":"e_1_3_2_46_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2012.8"},{"key":"e_1_3_2_47_2","doi-asserted-by":"publisher","DOI":"10.1128\/mSystems.00191-16"},{"key":"e_1_3_2_48_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01541-09"},{"key":"e_1_3_2_49_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.03006-05"},{"key":"e_1_3_2_50_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-10-421"},{"key":"e_1_3_2_51_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00062-07"},{"key":"e_1_3_2_52_2","volume-title":"R: a language and environment for statistical computing","author":"R Development Core Team","year":"2008","unstructured":"R Development Core Team . 2008. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http:\/\/www.R-project.org ."},{"key":"e_1_3_2_53_2","unstructured":"Hothorn\nT\nHornik\nK\n. 2015. exactRankTests: exact distributions for rank and permutation tests. https:\/\/CRAN.R-project.org\/package=exactRankTests\n."},{"key":"e_1_3_2_54_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.71.12.8228-8235.2005"},{"key":"e_1_3_2_55_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0061217"},{"key":"e_1_3_2_56_2","author":"Oksanen J","year":"2016","unstructured":"Oksanen J . 2016. vegan: Community Ecology Package. https:\/\/CRAN.R-project.org\/package=vegan .","journal-title":"vegan: Community Ecology Package"},{"key":"e_1_3_2_57_2","doi-asserted-by":"publisher","DOI":"10.1890\/08-1823.1"},{"key":"e_1_3_2_58_2","doi-asserted-by":"publisher","DOI":"10.1007\/978-0-387-98141-3"},{"key":"e_1_3_2_59_2","author":"Wilke C","year":"2016","unstructured":"Wilke C . 2016. cowplot: streamlined plot themes and plot annotations for 'ggplot2'. https:\/\/CRAN.R-project.org\/package=cowplot .","journal-title":"cowplot: streamlined plot themes and plot annotations for 'ggplot2'"},{"key":"e_1_3_2_60_2","doi-asserted-by":"publisher","DOI":"10.18637\/jss.v021.i12"}],"updated-by":[{"DOI":"10.1128\/msphere.00296-17","type":"correction","label":"Correction","source":"publisher","updated":{"date-parts":[[2017,7,19]],"date-time":"2017-07-19T00:00:00Z","timestamp":1500422400000}}],"container-title":["mSphere"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/mSphere.00169-17","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/mSphere.00169-17","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,3,7]],"date-time":"2022-03-07T22:56:35Z","timestamp":1646693795000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/mSphere.00169-17"}},"subtitle":[],"editor":[{"given":"Timothy M.","family":"LaPara","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2017,6,28]]},"references-count":59,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2017,6,28]]}},"alternative-id":["10.1128\/mSphere.00169-17"],"URL":"https:\/\/doi.org\/10.1128\/msphere.00169-17","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/127035","asserted-by":"object"}]},"ISSN":["2379-5042"],"issn-type":[{"value":"2379-5042","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,6,28]]},"assertion":[{"value":"2017-04-13","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2017-06-09","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2017-06-28","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e00169-17"}}