{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T01:09:28Z","timestamp":1790644168014,"version":"4.1.0"},"reference-count":37,"publisher":"American Society for Microbiology","issue":"4","license":[{"start":{"date-parts":[[2020,7,29]],"date-time":"2020-07-29T00:00:00Z","timestamp":1595980800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2020,8,26]],"date-time":"2020-08-26T00:00:00Z","timestamp":1598400000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"funder":[{"DOI":"10.13039\/100000060","name":"HHS | NIH | National Institute of Allergy and Infectious Diseases","doi-asserted-by":"publisher","award":["AI143743"],"award-info":[{"award-number":["AI143743"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["mSphere"],"published-print":{"date-parts":[[2020,8,26]]},"abstract":"<jats:p>\n            Regulatory small RNAs (sRNAs) are a class of RNA molecules that are produced in bacterial cells but that typically do not encode proteins. Instead, they perform a variety of critical functions within the cell as RNA. Most bacterial genomes do not include annotations for sRNA genes, and any type of analysis that is performed using a bacterial genome as a reference will therefore overlook data for sRNAs. In this study, we reexamined hundreds of previously generated\n            <jats:named-content content-type=\"genus-species\">S. aureus<\/jats:named-content>\n            RNA-Seq data sets and reanalyzed them to generate data for sRNAs. To do so, we utilized an updated\n            <jats:named-content content-type=\"genus-species\">S. aureus<\/jats:named-content>\n            genome annotation file, previously generated by our group, which contains annotations for 303 sRNAs. The data generated (which were previously discarded) shed new light on sRNAs in\n            <jats:named-content content-type=\"genus-species\">S. aureus<\/jats:named-content>\n            , most of which are unstudied, and highlight certain sRNAs that are likely to play important roles in the cell.\n          <\/jats:p>","DOI":"10.1128\/msphere.00439-20","type":"journal-article","created":{"date-parts":[[2020,7,28]],"date-time":"2020-07-28T12:39:27Z","timestamp":1595939967000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":18,"title":["Reading between the Lines: Utilizing RNA-Seq Data for Global Analysis of sRNAs in Staphylococcus aureus"],"prefix":"10.1128","volume":"5","author":[{"given":"Hailee M.","family":"Sorensen","sequence":"first","affiliation":[{"name":"Department of Biological Sciences, Ohio University, Athens, Ohio, USA"},{"name":"Honors Tutorial College, Ohio University, Athens, Ohio, 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